############################################################
###
### . O ¡ o STRUCTURE MEME ¡ . O o
###
### Chimera command file generated from TeXshade logo data
### use '.cmd' or '.com' suffix
###
### Reference sequence: 'E_coli_GlpF', e.g. PDB 1FX8
###
############################################################
############################################################
### residue colors: (set with \memeRed{residues} etc.)
### DE (Red)
### HKR (Blue)
### CGNQSTY (Yellow)
### FILMW (Black)
### APV (White)
############################################################
############################################################
### residues in labels: (\memelabelcutoff{bit-value})
### 0.1 bit required to appear
### > : . indicate 3, 2, and 1 bit levels
############################################################
############################################################
### initialize & load structure
############################################################
close session; background solid white;
echo load structure file for 'E_coli_GlpF', e.g. PDB 1FX8
open #0; ~ribbon; ~surface
############################################################
### to set ball scale, change factor ]0.0 - 1.0]
### in 'setattr m ballScale <factor> #0' below,
### or use the \chimeraballScale{factor} command
############################################################
setattr m ballScale 1.0 #0
############################################################
### display alpha-carbons only
############################################################
represent bs @ca; show @ca
############################################################
### name structure model
############################################################
setattr m name logo #0
############################################################
### logo data
############################################################
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