RELEASE HISTORY OF THE "readMzXmlData" PACKAGE ============================================== Version 2.8.2 [2022-11-08]: - Fix duplicated manual to avoid NOTE on CRAN. - readMzXmlData now depends on R 4.2.0. - Update URLs to https where possible. Version 2.8.1 [2015-09-16]: - Import utils::tail. Version 2.8 [2014-09-27]: - mqReadMzXml is removed. Use MALDIquantForeign::importMzXml instead. Version 2.7 [2013-07-03]: - Replace all paste(..., sep="") calls by paste0; now readMzXmlData depends on R >= 2.15. - For empty scans mass and intensity are double() instead of list(). Version 2.6 [2013-04-03]: - Remove LICENSE file. - DESCRIPTION: move base64enc, digest and XML to "Imports". - mqReadMzXml is marked as deprecated. Use MALDIquantForeign::importMzXml instead. Version 2.5 [2012-12-09]: - Replace .base64decode by base64enc::base64decode. - Replace .fregexpr by .revfregexpr (start search for sha1 sum from the end of the file). Version 2.4 [2012-09-12]: - Fix error message if a required attribute is missing. - Attribute "scanCount" is now optional (as intended in mzXML specification). - Assume msLevel==1 if attribute "msLevel" is missing. - Update DESCRIPTION file to use Authors@R and depends on R>=2.14 now. - Roxygenize package. Version 2.3 [2012-05-06]: - mqReadMzXml always returns a list of MassSpectrum objects (for a single MassSpectrum object it returns a list, too). Version 2.2.1 [2012-03-09]: - Keep filename if removeMetaData==TRUE. - Replace some warning()'s by stop()'s. Version 2.2 [2012-01-30]: - Add compression support (compressionType="zlib"). Version 2.1.1 [2012-01-28]: - Remove import directives in NAMESPACE (Otherwise installation fails on R<2.14 because bitops has no NAMESPACE file.). Version 2.1 [2012-01-25]: - Change NAMESPACE file. - Hide .base64decode by NAMESPACE. - Add compressionType and compressedLen attributes (but don't handle them due lack of test files). Version 2.0.1 [2012-01-11]: - Fix dataProcessing parsing. Version 2.0 [2011-10-04]: - Complete rewrite of mzXML parser (using xmlEventParse; no wrapper of caMassClass' read.mzXML anymore). Version 1.3.1 [2011-09-24]: - Fix import of mzXML 3.x files. (attribute "pairOrder" (mzXML 2.2) is called "contentType" in 3.x). Version 1.3 [2011-05-28]: - Add mqReadMzXml. Version 1.2 [2011-03-21]: - Unhide .read.mzXML and .base64decode by NAMESPACE. - Surround package names by double quotes. Version 1.1 [2011-02-22]: - Prepend dot to function names of read.mzXML and base64decode to avoid conflicts with caMassClass. - Hide .read.mzXML and .base64decode by NAMESPACE. Version 1.0 [2011-02-18]: - First public release. - Reads mass spectrometry data from mzXML files.
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