RELEASE HISTORY OF THE "readBrukerFlexData" PACKAGE =================================================== Version 1.9.0 [2022-06-19]: - Add basic support for cubic calibration as encoded in "V1.0TOF2CalibrationConstants" (fixes https://github.com/sgibb/readBrukerFlexData/issues/3). Contributed by Samuel Granjeaud (@SamGG) and Alan Race (@AlanRace). Version 1.8.5 [2017-04-22]: - Don't errorously convert tof to mass if "V1.0CTOF2CalibrationConstants" was used and throw a warning. Version 1.8.4 [2016-11-29]: - Add plain text instrument type in metaData. Version 1.8.3 [2016-11-29]: - Fix broken link to IEEE 754 standard in double2singlePrecision manual page. - Some acqu files report a greater number of tof/mass values than the number of intensity values in the fid files. Now the last tof/mass values are removed to keep the number of tof/mass/intensity equal and a warning is thrown. Thanks to Frederic Foucault <frederic.foucault@mabritec.com> for reporting this problem. Version 1.8.2 [2014-12-15]: - Fix sampleName for directory structures generated by old versions of the Bruker FlexControl software. Thanks to Christoph Lange <christoph@clange.de> for reporting this problem. Version 1.8.1 [2014-11-04]: - Fix: Reading a file that has no values for "HPClUse" or "Lift1"/"Lift2" failed. Thanks to Christoph Lange <christoph@clange.de> for reporting this problem. Version 1.8 [2014-09-26]: - mqReadBrukerFlex is removed. Use MALDIquantForeign::importBrukerFlex instead. Version 1.7 [2013-08-10]: - Always return intensity values as "double". - Now all negative intensity values are replaced by zero. This could be disabled by setting the new argument "keepNegativeIntensities" to "TRUE" [not recommended]. - Replace all paste(..., sep="") by paste0; now readBrukerFlexData depends on R >= 2.15. Version 1.6.3 [2013-04-28]: - Fetch spectrum position from IMS data files. Version 1.6.2 [2013-03-28]: - Fix: empty digityzerType, spectrumType, acquisitionMode throw an error. Version 1.6.1 [2013-03-28]: - metaData: update digityzerType, spectrumType, acquisitionMode. - Remove LICENSE file. Version 1.6 [2012-12-08]: - mqReadBrukerFlex is marked as deprecated. Use MALDIquantForeign::importBrukerFlex instead. - Fix description. Version 1.5 [2012-10-19]: - readBrukerFlexFile doesn't store original mass in metaData$backup anymore if HPC was detected (to get original mass set argument "useHpc" to FALSE). Version 1.4 [2012-09-10]: - Update DESCRIPTION file to use Authors@R and depends on R>=2.14 now. - Add warning if LIFT mode was used. - Split into multiple files. - Roxygenize package. Version 1.3 [2012-05-06]: - mqReadBrukerFlex always returns a list of MassSpectrum objects (for a single MassSpectrum object it returns a list, too). - Eliminate 4 comments limit. Version 1.2.7 [2012-03-09]: - Keep filename if removeMetaData==TRUE. Version 1.2.6 [2012-03-08]: - Accept comma as decimal mark for timeDelta. Version 1.2.5 [2012-03-07]: - Fix directory separator handling for sampleName on windows. Version 1.2.4 [2012-02-02]: - Accept comma as decimal mark in acqu files. - Replace some warning()'s by stop()'s. Version 1.2.3 [2012-01-29]: - Fetch endianness of fid file from acqu file. - Change NAMESPACE. - Hide .hpc by NAMESPACE. Version 1.2.2 [2012-01-18]: - Fix warning message "empty spectrum". Version 1.2.1 [2011-12-19]: - Set default value filterZeroIntensities=FALSE. Version 1.2 [2011-12-19]: - Add filterZeroIntensities parameter to readBrukerFlexFile. - Fix bug which produced NaN's if ML3==0 (reported and patched by Julien Textoris). Version 1.1 [2011-05-28]: - Add mqReadBrukerFlex. - Depends on R>=2.10. Version 1.0.5 [2011-03-21]: - Surround package names by double quotes. Version 1.0.4 [2011-02-19]: - Replace library reference in cpSpecHpcMzXml-data to readMzXmlData. - Replace all paste(directory, file, sep="/") by file.path(directory, file). Version 1.0.3 [2011-02-16]: - Fix directory separator in an example. Version 1.0.2 [2011-02-16]: - Fix directory separator in regular expression. Version 1.0.1 [2011-02-16]: - Fix example code. - Minor typos in documentation corrected. Version 1.0 [2011-02-15]: - First public release. - Reads acqu and fid files generated by mass spectrometer of Bruker Daltonics' *flex series.
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