2018-06-25 14:53 warnes
* ChangeLog, NEWS, inst/ChangeLog, inst/NEWS: Move NEWS and
ChangeLog to top level.
2018-06-25 14:52 warnes
* ChangeLog, NEWS: Remove NEWS and ChangeLog soft links
2018-06-20 21:06 warnes
* inst/ChangeLog: Update ChangeLog for gmodels 2.18.0.
2018-06-20 21:04 warnes
* DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS for gmodels
2.18.0.
2018-06-20 21:02 warnes
* NAMESPACE: Add imports from stats package.
2018-06-20 20:51 warnes
* DESCRIPTION, inst/ChangeLog: Update DESCRIPTION and ChangeLog for
gmodels 2.16.1
2018-06-20 20:50 warnes
* NAMESPACE: Remove obsolete functions.
2018-06-20 20:46 warnes
* R/fit.contrast.R, man/ci.Rd, man/estimable.Rd,
man/fit.contrast.Rd: Fix R CMD check issues.
2018-06-20 20:42 warnes
* R/ci.R: Remove trailing whitespace
2018-06-20 20:40 warnes
* R/est_p_ci.R: Use base::trimws() instead of gdata::trim()
2018-06-20 20:35 warnes
* test: Remove duplicated/incorrect 'test' directory.
2017-06-12 23:53 warnes
* DESCRIPTION: Update imports
2017-06-12 23:53 warnes
* NAMESPACE: Add imports for base R packages to NAMESPACE
2017-06-05 21:27 warnes
* inst/NEWS: Update NEWS and ChangeLog files for 2.18.0.
2016-08-15 19:11 warnes
* test, test/lme-test.R, test/test_estimable_mlm.R: Add tests for
mlm and (obsolete) lme
2016-08-15 19:05 warnes
* R/est_p_ci.R: Add est_p_ci generic and lm method
2016-08-12 17:15 warnes
* DESCRIPTION, NAMESPACE, R/ci.R, R/fit.contrast.R, inst/ChangeLog,
inst/NEWS, man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd:
Updates...
2015-07-22 00:53 warnes
* DESCRIPTION: Update gmodels DESCRIPTION
2015-07-22 00:48 warnes
* test, tests, tests/lme-test.R: Renamed 'test' directory to
'tests', commented out tests for lme4 which has a changed API
2015-07-20 23:38 warnes
* DESCRIPTION, NAMESPACE: Changs to squash new R CMD check warnings
2015-07-19 03:22 warnes
* DESCRIPTION, NAMESPACE, R/ci.R, R/est.mer.R, R/estimable.R,
R/fit.contrast.R, R/to.est.R, inst/NEWS, man/ci.Rd,
man/estimable.Rd, man/fit.contrast.Rd: - Removed references to
'mer' objects, sincel the nlme4 update is not backwards
compatible with my code.
- Removed 'require' calls.
2015-07-19 02:34 warnes
* DESCRIPTION, inst/ChangeLog, inst/NEWS: Update DESCRIPTION,
ChangeLog, and NEWS for gmodels 2.16.1
2015-07-19 02:30 warnes
* R/ci.R, man/ci.Rd: ci.binom() was using an incorrect method for
calculating binomial confidence interval. The revised code
calculates the Clopper-Pearson 'exect' interval, which is
*conservative* due to the discrete nature of the binomial
distribution.
2015-05-02 17:38 warnes
* Rename 'trunk' to 'pkg' for compatibility with R-forge
2015-04-06 21:52 warnes
* Add ChangeLog files to repository
2014-07-24 15:18 warnes
* Update NEWS for gmodels 2.16.0
2014-07-24 15:14 warnes
* - Estimable now adds the class 'estimable' to returned objects.
- New ci() method for estimable objects.
- Minor improvemets to man page formatting.
2013-07-18 14:09 warnes
* Looks like Brian Ripley repackaged for R 3.0.0 and bumped version
number, so change it to 2.15.5
2013-07-18 13:57 warnes
* Update for gmodels 2.15.4
2013-07-18 13:54 warnes
* Update to current Rd syntax
2013-07-18 13:46 warnes
* Correct bug in estimable.mlm
2013-07-15 18:13 warnes
* Remove unused argument to ci.mer
2012-06-28 00:49 warnes
* Update for gmodels version 2.15.3.
2012-06-28 00:47 warnes
* Move percentile() function to a separate file.
2012-06-28 00:41 warnes
* Update est.mer() to support new S4 "mer" class.
2012-06-28 00:40 warnes
* Make lme4 example executable.
2012-06-27 22:42 warnes
* Add test code submitted by Ariel.Muldoon@oregonstate.edu.
2012-04-19 22:09 warnes
* Update for release 2.15.2
2012-04-19 22:07 warnes
* Update version and date.
2012-04-19 22:06 warnes
* The 'Design' package has been replaced my 'rms', so update man
page references.
2012-04-19 22:05 warnes
* More fixes for support of S4 'mer' class from lme4 package.
2012-04-19 21:13 warnes
* Split long line.
2012-04-19 17:50 warnes
* Changes to pass R CMD check
2011-12-14 18:17 warnes
* Improve formatting of ci.mer().
2011-12-14 18:14 warnes
* Modify est.mer to work with recent lme4 'mer' S4 objects.
2011-01-16 22:17 warnes
* Fix warnings reported by R CMD check. Update version number to
2.15.1.
2009-05-09 05:29 warnes
* Add tests for lme4 'mer' objects
2009-05-09 05:04 warnes
* Update for 2.15.0
2009-05-09 05:02 warnes
* Update description for 2.15.0
2009-05-09 05:01 warnes
* Add support for lme4's 'mer' objects
2009-05-09 05:00 warnes
* Add support for lme4's 'mer' objects
2009-05-09 04:53 warnes
* Fix .Rd syntax error
2009-05-09 04:37 warnes
* Add softlinks for ChangeLog and NEWS to top level dir for
convenience
2009-05-09 04:36 warnes
* Move ChangeLog and NEWS files into inst directory
2009-05-09 04:00 warnes
* Update Greg's email address
2008-04-10 14:05 warnes
* Improve languages a bit
2008-01-02 16:56 warnes
* Update Marc's email address
2007-12-12 21:16 warnes
* Move copyright notice for Randall's contributions from License
section to Author section of the DESCRIPTION file.
2007-12-07 22:21 warnes
* Update DESCRIPTION and NEWS for release 2.14.1
2007-12-07 22:10 warnes
* Correct minor typos in man page for estimable()
2007-12-07 22:09 warnes
* Add support for lme models to estimable()
2007-12-07 22:07 warnes
* Replace non-ascii characters in Soren's name with (equivalent?)
ascii character to avoid character encoding issues.
2007-10-22 02:24 warnes
* Clarify GPL version
2007-07-26 00:20 warnes
* Add support for mlm to estimable().
2007-07-26 00:10 warnes
* Add estimable method for mlm objects
2007-03-09 22:35 warnes
* Remove stray character
2007-03-09 20:10 warnes
* Update NEWS file.
2007-03-09 20:07 warnes
* Update version number
2007-03-09 20:06 warnes
* Minor code formatting changes
2007-03-09 20:06 warnes
* Flip lower and upper interval in ci.lmer(). Add example to man
page.
2007-03-09 19:43 warnes
* Fix some old email addressses that got missed
2006-11-29 00:11 warnes
* Update for 2.13.1
2006-11-29 00:05 warnes
* Correct declartion of S3 methods for estimable()
2006-11-29 00:05 warnes
* Add additional suggested packages
2006-11-29 00:04 warnes
* - Add generic
- Fix code vs. doc inconsistiencies
2006-11-28 22:38 warnes
* Remove extraneous comma that causes errors in R 2.5.0
2006-11-27 20:45 warnes
* Update for 2.13.1
2006-11-27 20:36 warnes
* Add missing export of methods for estimable()
2006-11-14 22:25 ggorjan
* Removed executable property
2006-08-02 22:21 warnes
* Update my email address
2006-06-06 19:17 nj7w
* Updated ci, estimable and fit.contrast as per Randall Johnson
2006-06-05 21:00 nj7w
* Additions as per Randall C Johnson
2006-06-05 20:59 nj7w
* Additions as per Randall C Johnson
2006-06-05 20:57 nj7w
* - New function to estimate CI's and p-values using mcmcsamp()
from the
Matrix package
2006-05-05 18:29 nj7w
* Fixed an error: According to Marc Schwartz - there was an error
when a matrix without dimnames(or names(dimnames)) was passed as
x argument
2005-12-13 16:03 nj7w
* Removed ChangeLog
2005-12-13 16:02 nj7w
* Updated NEWS
2005-12-12 21:57 nj7w
* Updated version number for CRAN
2005-12-04 06:27 warnes
* Update for 2.11.0
2005-12-04 06:12 warnes
* Integration of code changes suggested by Randall C Johnson to add
support for lmer (lme version 4) objects to ci(), estimable(),
and
fit.contrast().
Addition of simplified coefficient specificaiton for estimable()
based on a function provided by Randall C Johnson. It is now
possible to do things like:
estimable(reg, c("xB"=1,"xD"=-1) )
instead of:
estimable(reg, c( 0, 1, 0, -1) )
which should make estimable much easier to use for large models.
2005-12-01 16:54 nj7w
* Updated Greg's email address
2005-10-27 11:21 warnes
* Update version number. Bump minor version since we added
functionality.
2005-10-27 10:33 warnes
* Add ci.binom() to NAMESPACE, bump version
2005-10-26 13:39 warnes
* Add ci.binom
2005-10-25 21:18 warnes
* Add gdata::nobs to import list. Needed by ci()
2005-09-12 15:44 nj7w
* Updated Greg's email
2005-09-07 15:31 nj7w
* Fixed man page
2005-09-06 21:34 nj7w
* Updated DESCRIPTION
2005-09-06 21:34 nj7w
* Added NEWS
2005-09-06 16:21 nj7w
* Fixed the Package name
2005-09-02 23:10 nj7w
* Added ChangeLog
2005-08-31 16:28 nj7w
* Added DESCRIPTION file
2005-08-31 16:27 nj7w
* removed DESCRIPTION.in
2005-07-11 21:35 nj7w
* Revision based on Marc Schwartz's suggestions:
1) Added 'dnn' argument to enable specification of dimnames as
per table()
2) Corrected bug in SPSS output for 1d table, where proportions
were being printed and not percentages ('%' output)
2005-06-09 14:20 nj7w
* Updating the version number, and various help files to
synchronize splitting of gregmisc bundle in 4 individual
components.
2005-06-09 14:13 nj7w
* Updates by Marc Schwartz:
CrossTable:
# Revision 2.0 2005/04/27
# Added 'format = "d"' to all table count output
# so that large integers do not print in
# scientific notation
2005-05-13 18:59 nj7w
* 1) Using dQuote.ascii function in read.xls as the new version of
dQuote doesn't work proprly with UTF-8 locale.
2) Modified CrossTable.Rd usage in gmodels
3) Modified heatmap.2 usage in gplots.
2005-05-11 13:51 warnes
* Add dependency on gdata::frameApply.
2005-03-31 20:32 warnes
* Add ceofFrame function to NAMESPACE
2005-03-31 19:05 warnes
* coefFrame example needs to properly load ELISA data from gtools
package
2005-03-31 18:31 warnes
* Ensure that each file has $Id$ header, and no $Log$
2005-03-31 18:30 warnes
* Add coefFrame() function contributed by Jim Rogers
2005-01-18 19:53 warnes
* Removed Windows Line Endings
2005-01-14 21:40 nj7w
* Updated the manual to reflect prop.chisq change in its R file.
2005-01-14 19:14 warnes
* Nitin added display of the Chisquare contribution of each cell,
as suggested
by Greg Snow.
2005-01-12 20:50 warnes
* Add dependency on R 1.9.0+ to prevent poeple from installing on
old
versions of R which don't support namespaces.
2004-12-23 19:32 nj7w
* Split the function print.CrossTable.vector in two parts - for SAS
behaiour and SPSS behaviour. Also put the code of printing
statistics in a function 'print.statistics'
2004-12-21 22:38 warnes
* Added & extended changes made by Nitin to implement 'SPSS'
format, as suggested by
Dirk Enzmann <dirk.enzmann@jura.uni-hamburg.de>.
2004-09-30 21:03 warneg
* Fix typos.
2004-09-27 21:01 warneg
* Updated to pass R CMD check.
2004-09-03 22:44 warneg
* Add explicit package to call to quantcut in example.
2004-09-03 17:27 warneg
* initial bundle checkin
2004-09-02 17:14 warneg
* Initial revision
2004-05-25 02:57 warnes
* Updates from Mark Schwartz.
2004-04-13 11:41 warnes
* Fix latex warning: it doesn't like double subscripts.
2004-03-26 22:28 warnes
* Reflect movement of code from 'mva' package to 'stats' in R
1.9.0.
2004-03-25 20:09 warnes
* - Estimable was reporting sqrt(X^2) rather than X^2 in the
output.
- Provide latex math markup for linear algebra expressions in
help text.
- Other clarifications in help text
2004-03-25 18:17 warnes
* Add enhancements to estimable() provided by S�ren H�jsgaard
\email{sorenh@agrsci.dk}:
I have made a modified version of the function [..] which
1) also works on geese and gee objects and
2) can test hypotheses af the forb L * beta = beta0 both as a
single Wald test and row-wise for each row in L.
2003-11-17 21:40 warnes
* - Fix incorrect handling of glm objects by fit.contrast, as
reported
by Ulrich Halekoh, Phd <ulrich.halekoh@agrsci.dk>.
- Add regression test code to for this bug.
2003-08-07 03:49 warnes
* - Fixed incorrect denominator in standard error for mean in
ci.default.
2003-04-22 17:24 warnes
* - the variable 'df' was used within the lme code section
overwriting
the argument 'df'.
2003-03-12 17:58 warnes
* - Fixed a typo in the example
- Added to lme example
2003-03-07 15:48 warnes
* - Minor changes to code to allow the package to be provided as an
S-Plus chapter.
2003-01-30 21:53 warnes
* - Renamed 'contrast.lm' to 'fit.contrast'. This new name is more
descriptive and makes it easier to create and use methods for
other
classes, eg lme.
- Enabled fit.contrast for lme object now that Doug Bates has
provided
the necessary support for contrasts in the nlme package.
- New contrast.lm function which generates a 'depreciated'
warning and
calls fit.contrast
- Updated help text to match changes.
2003-01-30 21:41 warnes
* - Removed argument 'correct' and now print separate corrected
values
for 2 x 2 tables.
- Added arguments 'prop.r', 'prop.c' and 'prop.t' to toggle
printing
of row, col and table percentages. Default is TRUE.
- Added argument 'fisher' to toggle fisher exact test. Default is
FALSE.
- Added McNemar test to statistics and argument 'mcnemar' to
toggle
test. Default is FALSE.
- Added code to generate an invisible return list containing
table
counts, proportions and the results of the appropriate
statistical tests.
2003-01-30 14:58 warnes
* - Added explicit check to ensure that the number of specified
contrasts is less than or equal to the ncol - 1. Previously, this
failed with an obtuse error message when the contrast matrix had
row
names, and silently dropped contrasts over ncol-1.
2002-11-04 14:13 warnes
* - Moved fisher.test() to after table is printed, so that table is
still printed in the event that fisher.test() results in errors.
2002-10-29 23:06 warnes
* - Fixes to fast.svd to make it actually work.
- Updates to man page to fix mistmatches between code and docs
and to
fix warnings.
2002-10-29 23:00 warnes
* - Moved make.contrasts to a separate file.
- Enhanced make contrasts to better label contrast matrix, to
give
how.many a default value, and to coerce vectors into row
matrixes.
- Added help page for make.contrasts.
- Added link from contrasts.lm seealso to make.contrasts.
2002-10-29 19:29 warnes
* Initial checkin for fast.prcomp() and fast.svd().
2002-09-26 12:11 warnes
* - Added note and example code to illustrate how to properly
compute
contrasts for the first factor in the model.
2002-09-24 19:12 warnes
* - Fixed a typo.
2002-09-23 14:27 warnes
* - Fixed syntax errors in barplot2.Rd and CrossTable.Rd
- Fixed incorrect translation of 'F' (distribution) to 'FALSE' in
glh.test.Rd
2002-09-23 13:59 warnes
* - Modified all files to include CVS Id and Log tags.
2002-09-23 13:38 warnes
* - Added CrossTable() and barplot2() code and docs contributed by
Marc Schwartz.
- Permit combinations() to be used when r>n provided
repeat.allowed=TRUE
- Bumped up version number
2002-08-01 19:37 warnes
* - Corrected documentation mismatch for ci, ci.default.
- Replaced all occurences of '_' for assignment with '<-'.
- Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
with
the spelled out version.
- Updaded version number and date.
2002-04-09 00:51 warneg
* Checkin for version 0.5.3
2002-03-26 21:22 warneg
* - Changed methods to include '...' to match the generic.
- Updated for version 0.5.1
2002-03-26 15:30 warneg
* Removed incorrect link to 'contrast' from seealso.
2002-02-20 20:09 warneg
* Minor changes, typo and formatting fixes.
2002-01-17 23:51 warneg
* - Fixed errror in last example by adding 'conf.int' parameter to
'estimable' call.
2002-01-17 23:42 warneg
* - Fixed typo in code that resulted in an syntax error.
2002-01-10 17:35 warneg
* - print.glh.test() was using cat() to printing the call. This
didn't work and
generated an error.
2001-12-19 20:06 warneg
* - Fixed display of formulae.
- Added description of return value
2001-12-19 20:05 warneg
* - Removed extra element of return object.
2001-12-18 22:14 warneg
* - Updated documentation to reflect change of parameters from
'alpha'
to 'conf.int', including the new optional status of the
confidence
intervals.
2001-12-18 22:12 warneg
* - Modified to make confidence intervals optional. Changed 'alpha'
parameter giving significance level to 'conf.int' giving
confidence
level.
2001-12-18 21:36 warneg
* - Added summary.glh.test to alias, usage, and example sections.
2001-12-18 21:34 warneg
* - Modified to work correctly when obj is of class 'aov' by
specifying
summary.lm instead of summary. This ensures that the summary
object
has the fields we need.
- Moved detailed reporting of results from 'print' to 'summary'
function and added a simpler report to 'print'
2001-12-18 21:27 warneg
* - Modified to work correctly when obj is of class 'aov' by
specifying
summary.lm instead of summary. This ensures that the summary
object
has the fields we need.
2001-12-18 00:45 warneg
* Initial checkin.
2001-12-17 18:59 warneg
* - Fixed spelling errors.
2001-12-17 18:52 warneg
* - Fixed the link to contrasts.lm.
- Rephrased title/description to be more clear.
2001-12-10 19:35 warneg
* Renamed 'contrsts.coeff.Rd' to 'estimable.Rd' corresponding to
function rename.
2001-12-10 19:26 warneg
* renamed from contrast.coeff.R to estimable.R (incorrectly via
contrast.lm.R)
2001-12-07 19:50 warneg
* - Added text noting that lme is now supported.
2001-12-07 19:19 warneg
* - Fixed typo: DF column was being filled in with p-value.
2001-12-07 18:49 warneg
* - Added ci.lme method to handle lme objects.
2001-10-16 23:15 warneg
* Fixed unbalanced brace.
2001-08-25 05:52 warneg
* - Added CVS header.
- Added my email address.
2001-05-30 13:23 warneg
* Initial revision
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