2022-11-04 Dirk Eddelbuettel <edd@debian.org>
* src/init.c: Add 'void' for proper prototype pleasing clang-15
* R/fastLm.R (summary.fastLm,print.fastLm): Refer to correct and full
variable name df.residual in the returned object
* .github/workflows/ci.yaml (jobs): Update to actions/checkout@v3
2022-09-15 Jonah Gabry <jgabry@gmail.com>
* inst/skeleton/rcppeigen_hello_world.cpp: Correct typo
2022-04-08 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Depends): Add a versioned dependency on R 3.6.0 or
later because of our use of FCONE to support USE_FC_LEN_T
2022-04-05 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version, Date): CRAN Release 0.3.3.9.2
* inst/NEWS.Rd: Release 0.3.3.9.2
2022-04-04 Dirk Eddelbuettel <edd@debian.org>
* src/fastLm.cpp: Add FCONE in two calls for improved Fortran and C
character interface per Writing R Extensions, Section 6.6.1
2022-01-16 Dirk Eddelbuettel <edd@debian.org>
* inst/tinytest/test_wrap.R: Added (optional) large memory wrap tests
* inst/tinytest/cpp/wrap.cpp: Added C++ part of test
* .codecov.yml: Added to not trigger PR fail for small additions
2022-01-16 Mikael Jagan <jaganmn@mcmaster.ca>
* inst/include/RcppEigenWrap.h: Refine use plain dense wrap() change
2022-01-15 Mikael Jagan <jaganmn@mcmaster.ca>
* inst/include/RcppEigenWrap.h: Use R_xlen_t for vectors rows + cols
2021-12-29 Dirk Eddelbuettel <edd@debian.org>
* README.md: Add total downloads badge
2021-12-08 Dirk Eddelbuettel <edd@debian.org>
* README.md: Remove unused continuous integration artifact and badge
2021-10-13 Dirk Eddelbuettel <edd@debian.org>
* inst/CITATION: Refinment of doi use
2021-10-10 Dirk Eddelbuettel <edd@debian.org>
* inst/CITATION: Switch JSS url to doi form per JSS request
* README.md: Idem
2021-07-19 Dirk Eddelbuettel <edd@debian.org>
* inst/include/RcppEigenWrap.h: Two more #nocov tags
* src/fastLm.cpp: One more #nocov tag
2021-07-18 Dirk Eddelbuettel <edd@debian.org>
* inst/tinytest/test_fastLm.R: Add tests for summary
* src/fastLm.cpp: Add a few #nocov tags
2021-07-17 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Date, Version): Roll minor version
* R/RcppEigen.package.skeleton.R (RcppEigen.package.skeleton): Also
import RcppEigen in DESCRIPTION
2021-06-07 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Date, Version): Roll minor version
* inst/tinytest/test_misc.R: New test file
* inst/tinytest/test_fastLm.R: Added tests
* R/fastLm.R: Add single one-line nocov tag
* .Rbuildignore: Add .covignore and .codecov.yml
2021-06-06 Dirk Eddelbuettel <edd@debian.org>
* README.md: Added coverage badge
* .github/workflows/ci.yaml (jobs): Turn on coverage
* .covrignore: Added
* .codecov.yml (ignore): Idem
* R/RcppEigen.package.skeleton.R: Set nocov
2021-05-09 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (URL): Add GitHub repo to URL field
2021-01-02 Dirk Eddelbuettel <edd@debian.org>
* R/RcppEigen.package.skeleton.R: Wrap any() around grepl()
2020-12-25 Dirk Eddelbuettel <edd@debian.org>
* .github/workflows/ci.yaml: Small tweaks to CI YAML file
2020-12-17 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version, Date): CRAN Release 0.3.3.9.1 (following
coordinated update of reverse dependency StanHeaders)
* inst/NEWS.Rd: Release 0.3.3.9.1
2020-12-14 Dirk Eddelbuettel <edd@debian.org>
* .github/workflows/ci.yaml: Add CI runner using r-ci
* README.md: Add new badge
2020-12-05 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version, Date): Release 0.3.3.9.0
* inst/include/Eigen: Upgraded to Eigen 3.3.9
* inst/include/unsupported/Eigen: Idem
* patches/eigen-3.3.9.diff: Carried local CRAN patches forward
* .travis.yml: Switch to r-ci using focal and bspm
* README.md: Updated URLs to https and/or redirect location
* inst/CITATION: Idem
* man/RcppEigen-package.Rd: Idem
* man/fastLm.Rd: Idem
2020-08-16 Dirk Eddelbuettel <edd@debian.org>
* README.md: Add JSS badge
2020-03-29 Dirk Eddelbuettel <edd@debian.org>
* README.md: Added commit badge, edited
2020-01-22 Dirk Eddelbuettel <edd@debian.org>
* README.md: README.md: Add a Debian badge
2019-11-16 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version, Date): Release 0.3.3.7.0
* inst/include/Eigen: Upgraded to Eigen 3.3.7
* inst/include/unsupported/Eigen: Idem
* patches/eigen-3.3.7.diff: Carried local CRAN patches forward
2019-11-01 Dirk Eddelbuettel <edd@debian.org>
* R/unit.test.R (compile_unit_tests): Removed as no longer needed
2019-10-31 Dirk Eddelbuettel <edd@debian.org>
* inst/tinytest/test_transform.R: Switch from RUnit to tinytest
* inst/tinytest/test_wrap.R: Idem
* inst/tinytest/cpp/transform.cpp: Added using Rcpp Attributes
* inst/tinytest/cpp/wrap.cpp: Idem
* inst/tinytest/cpp/sparse.cpp: More idiomatic Eigen code
* inst/tinytest/test_sparse.R: Idem
* .editorconfig: Added
2019-10-30 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Suggests): Switch from RUnit to tinytest
* .travis.yml (install): Ditto
* tests/tinytest.R: Converted to tinytest
* test_sparse.R: Converted to tinytest
* cpp/sparse.cpp: Added using Rcpp Attributes
2019-10-29 Dirk Eddelbuettel <edd@debian.org>
* test_fastLm.R: Converted to tinytest
* test_RcppEigen.R: Idem
* test_solution.R: Idem
* cpp/rcppeigen.cpp: Added using Rcpp Attributes
* cpp/solution.cpp: Idem
2019-10-28 Dirk Eddelbuettel <edd@debian.org>
* tests/tinytest.R: Renamed from tests/doRUnit.R
* inst/tinytest/test_fastLm.R: Renamed from inst/unitTests/runit*
* inst/tinytest/test_RcppEigen.R: Idem
* inst/tinytest/test_solution.R: Idem
* inst/tinytest/test_sparse.R: Idem
* inst/tinytest/test_transform.R: Idem
* inst/tinytest/test_wrap.R: Idem
2019-10-13 Dirk Eddelbuettel <edd@debian.org>
* README.md: Added CRAN + BioConductor badges for reverse depends,
add StackOverflow badge to recommend help searches under 'Rcpp'
* DESCRIPTION (Version, Date): Roll minor version
* R/RcppEigen.package.skeleton.R (RcppEigen.package.skeleton): Test for
example_code outside of haveKitten test; remove force argument if unused
2019-05-24 Dirk Eddelbuettel <edd@debian.org>
* vignettes/RcppEigen-Introduction.Rnw: Update vignette to use
RcppEigen:::eigen_version() instead of .Call()
2019-03-29 Dirk Eddelbuettel <edd@debian.org>
* inst/skeleton/rcppeigen_hello_world.cpp: Rework first example to
not rely on Eigen RNG which R CMD check would complain about.
2019-02-16 James Joseph Balamuta <balamut2@illinois.edu>
* R/runit.RcppEigen.R: Removed listing RcppEigen in Imports during
skeleton package creation.
2018-11-24 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version, Date): Release 0.3.3.5.0
2018-11-23 Dirk Eddelbuettel <edd@debian.org>
* inst/include/Eigen: Updated to release 3.3.5
* inst/include/unsupported: Idem
* patches/eigen-3.3.5.diff: Diff of local patches
2018-09-02 Dirk Eddelbuettel <edd@debian.org>
* .travis.yml: Switch Travis CI to R 3.5 repo
2018-05-30 Michael Weylandt <michael.weylandt@gmail.com>
* inst/examples/lmBenchmark.R: Update benchmark script to use
microbenchmark and to use exposed fastLm functions from Rcpp
packages rather than invoking .Call directly
2018-05-25 Ralf Stubner <ralf.stubner@daqana.com>
* inst/include/RcppEigenWrap.h: Use Rf_xlength and R_xlen_t to
support long vectors
2018-02-07 Dirk Eddelbuettel <edd@debian.org>
* patches/eigen-3.3.4.diff: Diff to upstream Eigen 3.3.4,
cherry-picked in the 3.3.4 branch of Yixuan
2018-02-05 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version, Date): Release 0.3.3.4.0
* inst/include/Eigen/src/Core/arch/CUDA/Half.h (Eigen): Condition use
of long long and unsigned long on C++11
* inst/include/Eigen/src/Core/arch/SSE/Complex.h (Eigen): Comment-out
use of diagnostic-suppressing pragma for gcc + clang to satisfy CRAN
* inst/include/Eigen/src/Core/util/DisableStupidWarnings.h: Idem
2018-02-04 Yixuan Qiu <yixuan.qiu@cos.name>
[ In RcppEigen 0.3.3.* branch ]
* inst/include/Eigen: Updated to the upstream 3.3 branch of Eigen
based on version 3.3.4
* inst/include/unsupported: Idem
* DESCRIPTION: Idem
* README.md: Idem
* inst/include/Eigen/src/Core/util/DisableStupidWarnings.h:
Patch from upstream Eigen that has not been ported to the 3.3 branch
(cf GitHub issue #48)
2017-11-19 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version, Date): Release 0.3.3.3.1
* R/inline.R: Use '::' not ':::' for Rcpp.plugin.maker
2017-08-26 Dirk Eddelbuettel <edd@debian.org>
* .travis.yml (before_install): Use https for curl fetch
2017-06-06 Yu Gong <armgong@yahoo.com>
* inst/include/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h:
Also permit compilation under Haiku-OS
2017-05-28 Dirk Eddelbuettel <edd@debian.org>
* inst/examples/lmBenchmark.R (do_bench): Remove spurious argument in
call to RcppEigen:::Eigen_SSE() (cf github issue #44)
2017-04-29 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.3.3.3.0
[ which again owes a very big thank you to Yixuan for doing the work! ]
2017-04-27 Dirk Eddelbuettel <edd@debian.org>
* .travis.yml: Switch to using run.sh for Travis CI
2017-04-27 Yixuan Qiu <yixuan.qiu@cos.name>
[ In RcppEigen 0.3.3.* branch ]
* inst/include/Eigen/src/Core/arch/CUDA/Half.h: Fixed compiler warning
on 'long long' type in C++ 98 mode
2017-03-14 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version, Date): Release 0.3.2.9.1
* src/init.c (R_init_RcppEigen): Call R_registerRoutines()
and R_useDynamicSymbols()
* NAMESPACE: Use .registration=TRUE on useDynLib
* R/fastLm.R (fastLmPure): Remove erroneous fourth argument from .Call
2017-03-13 Martin Maechler <maechler@r-project.org>
* inst/include/RcppEigenCholmod.h: Synchronize with Matrix package
2017-02-21 Yixuan Qiu <yixuan.qiu@cos.name>
[ In RcppEigen 0.3.3.* branch ]
* inst/include/Eigen: Updated to release 3.3.3 of Eigen
* inst/include/unsupported: Idem
* DESCRIPTION: Idem
* README.md: Idem
2017-01-20 Yixuan Qiu <yixuan.qiu@cos.name>
[ In RcppEigen 0.3.3.* branch ]
* inst/include/Eigen: Updated to release 3.3.2 of Eigen
* inst/include/unsupported: Idem
* DESCRIPTION: Idem
* README.md: Idem
* inst/unitTests/runit.RcppEigen.R, inst/unitTests/runit.sparse.R:
Explicitly convert matrix size to `double` type such that Rcpp can
properly return the value to R, thanks to ChingChuan and Dirk
2017-01-20 ChingChuan Chen <zw12356@gmail.com>
[ In RcppEigen 0.3.3.* branch ]
* inst/include/Eigen: Updated to release 3.3.1 of Eigen
* inst/include/unsupported: Idem
* DESCRIPTION: Idem
* inst/examples/lmBenchmark.R: Fixed function names
2016-12-22 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (URL, BugReports): Added / updated
2016-11-12 Yixuan Qiu <yixuan.qiu@cos.name>
[ In RcppEigen 0.3.3.* branch ]
* inst/include/Eigen: Updated to release 3.3.0 of Eigen
* inst/include/unsupported: Idem
* DESCRIPTION: Idem
* README.md: Idem
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h:
Added exporters for the new Map<SparseMatrix<T> > type
* inst/unitTests/runit.sparse.R: Unit tests for the new type
2016-08-20 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.3.2.9.0 with big thanks to Yixuan for doing
the work!
2016-08-19 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/Eigen: Updated to release 3.2.9 of Eigen
* README.md: Updated version number and fixed the NOTE from CRAN URL
check
2016-04-30 Dirk Eddelbuettel <edd@debian.org>
* README.md: Expanded
2016-04-28 James Joseph Balamuta <balamut2@illinois.edu>
* inst/include/RcppEigenWrap.h: Added an exporter class for
Map::RowVectorX<t> per http://stackoverflow.com/questions/36920689/
* inst/include/unitTests/runit.RcppEigen.R: Added row exporter unit
test.
2016-02-29 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version): Release 0.3.2.8.1
* inst/NEWS.Rd: Release 0.3.2.8.1
* debian/*: Changes for Debian release of 0.3.2.8.1
2016-02-28 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/Eigen/src/SparseCore/CompressedStorage.h,
inst/include/Eigen/src/SparseCore/SparseBlock.h,
inst/include/Eigen/src/SparseCore/SparseMatrix.h,
inst/include/Eigen/src/SparseCore/SparseRedux.h,
inst/include/Eigen/src/SparseCore/SparseVector.h:
Another patch from upstream to fix UBSAN null pointer errors
2016-02-23 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION (Version): Release 0.3.2.8.0
* DESCRIPTION (Author): Added Yixuan Qiu
* inst/NEWS.Rd: Release 0.3.2.8.0
2016-02-22 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/Eigen: Updated to release 3.2.8 of Eigen
* inst/include/unsupported: Idem
* DESCRIPTION: Idem
* README.md: Idem
* inst/include/Eigen/src/SparseCore/CompressedStorage.h,
inst/include/Eigen/src/Core/util/Memory.h: Applied patch from
upstream to fix UBSAN errors
2016-01-20 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.3.2.7.0
* debian/*: Changes for Debian release of 0.3.2.7.0
2016-01-19 Dirk Eddelbuettel <edd@debian.org>
* inst/unitTests/runit.sparse.R (test.sparseCholesky.R): Accomodate
stricter as.vector() requirements in R-devel
2016-01-18 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/Eigen: Updated to release 3.2.7 of Eigen
* inst/include/unsupported: Idem
* DESCRIPTION: Idem
* README.md: Idem
2015-11-01 Alexey Stukalov <alyst@users.noreply.github.com>
* src/fastLm.cpp: Do not include R's LAPACK header if MKL defined
2015-09-23 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.3.2.5.1
* debian/*: Changes for Debian release of 0.3.2.5.1
2015-09-21 Dirk Eddelbuettel <edd@debian.org>
* inst/include/Eigen/src/SparseCore/CompressedStorage.h: Added
somewhat adapted code from upstream PR #118 to address UBSAN
2015-08-21 Dirk Eddelbuettel <edd@debian.org>
* src/RcppEigen.cpp: Updated code to use Rcpp Attributes
* src/fastLm.cpp: Ditto
* src/fastLm.h: Ditto
* R/fastLm.R: Ditto
* inst/unitTests/runit.fastLm.R: Ditto
2015-08-04 Dirk Eddelbuettel <edd@debian.org>
* R/RcppEigen.package.skeleton.R: Correct kitten() use based on patch
kindly supplied by Grant Brown (cf GitHub issue #21)
2015-07-13 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Version 0.3.2.5.0
2015-07-13 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/Eigen/src/Core/Assign.h: Applied patch from upstream
Eigen that will appear in the next release
2015-07-12 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Added more explicitly quoting per R CMD check
* NAMESPACE: Explicitly importFrom() stats and utils packages
2015-07-11 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/Eigen: Updated to release 3.2.5 of Eigen
* inst/include/unsupported: Idem
* DESCRIPTION: Idem
* README.md: Idem
* inst/include/RcppEigenWrap.h: Fixed three incorrect error messages
2015-06-06 Dirk Eddelbuettel <edd@debian.org>
* R/RcppEigen.package.skeleton.R: Correct use of requireNamespace()
2015-02-26 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Version 0.3.2.4.0
* debian/*: Updated
2015-02-23 Dirk Eddelbuettel <edd@debian.org>
* inst/include/Eigen: Updated to release 3.2.4 of Eigen
* DESCRIPTION: Updated Version: and Date:
* README.md: Idem
* .travis.yml: Switch to ppa:edd/misc for binaries
* R/RcppEigen.package.skeleton.R: Use pkgKitten::kitten, if installed
* inst/skeleton/rcppeigen_hello_world.Rd: Added new page
* inst/skeleton/Makevars: Minor edits
* inst/skeleton/Makevars.win: Idem
* DESCRIPTION: Added Suggests: for pkgKitten
* .travis.yml: Also install pkgKitten
2014-12-22 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/Eigen: Updated to release 3.2.3 of Eigen
* DESCRIPTION: Idem
* README.md: Idem
2014-11-23 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/unitTests/runit.wrap.R: Added a number of unit tests
* inst/unitTests/runit.transform.R: Idem
* inst/unitTests/runit.sparse.R: Idem
2014-10-20 Dirk Eddelbuettel <edd@debian.org>
* inst/examples/lmBenchmark.R: Updated RcppArmadillo .Call in example
2014-08-21 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: New version 0.3.2.2.0 which was prepared expertly by
Yixuan Qiu in a nice and clean pull request -- a big thank you for that!
* DESCRIPTION: Adjusting Date: as well
2014-08-19 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/Eigen: Updated to release 3.2.2 of Eigen
* inst/unitTests/runit.wrap.R: More unit tests to reflect changes in
as() exporters
2014-05-29 Yixuan Qiu <yixuan.qiu@cos.name>
* inst/include/RcppEigenWrap.h: Added as() conversion from R vector to
Eigen::Array<T, 1, Eigen::Dynamic>
* inst/include/RcppEigenWrap.h: Fixed incorrect as() exporters
* inst/include/RcppEigenWrap.h: Check matrix type of "dgCMatrix"
instead of "CsparseMatrix"
* inst/include/RcppEigenWrap.h, inst/include/RcppEigenForward.h:
Added as() conversion from "dgRMatrix" to
Eigen::MappedSparseMatrix<T, Eigen::RowMajor>
2014-05-01 Dirk Eddelbuettel <edd@debian.org>
* inst/include/Eigen/src/Core/util/Memory.h: Applied patch by Gael
Guennebaud created in response to Doug's bug report (#803) which in
turn is based on the UBSAN report at CRAN by Brian Ripley
2014-03-06 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: New version 0.3.2.1.1
2014-03-05 Dirk Eddelbuettel <edd@debian.org>
* inst/include/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h:
Better, more general test for DIRENT feature thanks to Brian Ripley
2014-03-04 Dirk Eddelbuettel <edd@debian.org>
* inst/include/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h:
(re-)add another #ifndef excluding a line on Solaris
2014-03-03 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: New release version 0.3.2.1.0
2014-03-03 Douglas Bates <bates@stat.wisc.edu>
* inst/include/Eigen: Update to release 3.2.1 of Eigen
2014-03-01 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: New minor version 3.2.0.3
* DESCRIPTION: Switched to 'Imports: Rcpp (>= 0.11.0)'
* src/Makevars: Updated for Rcpp 0.11.0
* src/Makevars.win: Ditto
* R/RcppEigen.package.skeleton.R: Updated for Rcpp 0.11.0, also
updated for current R versions by removing deprecated 'namespace' arg
* man/RcppEigen.package.skeleton.Rd: Removed 'namespace' for current R
* inst/skeleton/rcppeigen_hello_world.cpp: Rewritten / extended
similar to the RcppArmadillo variant; now contains four functions
exported by Rcpp Attributes
* inst/skeleton/Makevars: Updated for Rcpp 0.11.0, also noted C++11 option
via setting of 'USE_CXX1X=' with R 3.1.0 or later
* inst/skeleton/Makevars.win: Ditto
2014-01-26 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: New minor version 3.2.0.2
2014-01-22 Dirk Eddelbuettel <edd@debian.org>
* NAMESPACE: Added importFrom(Rcpp, evalCpp) needed for next Rcpp
2014-01-12 Dirk Eddelbuettel <edd@debian.org>
* R/SHLIB.maker: Commented-out, file to be removed
2013-12-19 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Updated Description to mention MPL-2 license for Eigen
* inst/unitTests/runit.solutions.R: RUnit file converted from testthat
* inst/unitTests/runit.transform.R: Idem
* inst/unitTests/runit.wrap.R: Idem
* DESCRIPTION: Remove Suggests: of testthat
2013-12-18 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: New minor version 3.2.0.1
* DESCRIPTION: New maintainer
* DESCRIPTION: Added Copyright: reference to new COPYRIGHTS file
* DESCRIPTION: Added reference to new LICENSE file
* inst/COPYRIGHTS: Added, based on existing debian/copyright file
* LICENSE: Added to state MPL-2 for Eigen, GPL (>=2) for RcppEigen
* inst/include/Eigen/src/SparseLU/SparseLU.h: Applied Solaris patch
* inst/include/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h:
Idem
* inst/include/RcppEigenForward.h: Idem
2013-12-04 Dirk Eddelbuettel <edd@debian.org>
* debian/*: Added after emails with Doug
* .Rbuildignore: Added debian/
2013-11-13 Douglas Bates <bates@stat.wisc.edu>
* DESCRIPTION: New version, release date and dependencies
* inst/include/Eigen: Update to release 3.2.0 of Eigen
2013-02-03 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: New minor version 0.3.1.2.1 for upload to CRAN and JSS
* NEWS.org: Updated
2013-01-26 Dirk Eddelbuettel <edd@debian.org>
* vignettes/jss835/: Regroup all related files in this directory
* .Rbuildignore: Ignore vignettes/jss835
2013-01-14 Dirk Eddelbuettel <edd@debian.org>
* inst/CITATION: Added as provided by JSS editor
* man/fastLm.Rd: Added reference to JSS paper
* man/RcppEigen-package.Rd: Idem
2012-11-29 Douglas Bates <bates@stat.wisc.edu>
* DESCRIPTION: New version
* inst/include/Eigen, inst/include/unsupported: Update to version
3.1.2 of Eigen.
2012-11-29 Romain Francois <romain@r-enthusiasts.com>
* include/RcppEigenWrap.h: compatibility issue with Rcpp 0.10.1
2012-08-14 Dirk Eddelbuettel <edd@debian.org>
* R/flags.R: Add two (unexported) functions CxxFlags() and
RcppEigenCxxFlags() for use in Makefiles etc
2012-07-30 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenWrap.h, inst/unitTests/runit.RcppEigen.R:
Another suggestion from Gael Guennebaud to allow row vectors to be
wrapped.
2012-07-28 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenWrap.h, inst/unitTests/runit.RcppEigen.R: More
fixes to RcppEigenWrap.h and adjustment of tests accordingly.
The changes allow RowMajor matrices to be wrapped (thanks to Gael
Guennebaud) but cannot handle RowVector types. There will need to be
more template metaprogramming done to redirect the case of RowVector,
which cannot be changed to a ColMajor form.
* src/Makevars: Because of changes in R, -DNDEBUG is automatic.
One must override it with -UNDEBUG in the local ~/.R/Makevars to
activate the debugging code.
* inst/doc/code.R: New version of wrap code provides correct answer to
the badtrans example
* DESCRIPTION: Bump the date.
2012-07-27 Douglas Bates <bates@stat.wisc.edu>
* inst/include/Eigen/*: Changed to released version of Eigen-3.1.0
using the MPL2 license.
2012-07-19 Dirk Eddelbuettel <edd@debian.org>
* R/fastLm.R: correct residual standard error display
* R/fastLm.R: improved test for intercept once more with a tip of the
hat to Doug
2012-07-17 Dirk Eddelbuettel <edd@debian.org>
* R/fastLm.R: Corrections for R^2 in no-intercept case
2012-06-26 Douglas Bates <bates@stat.wisc.edu>
* DESCRIPTION, R/unit.test.R, inst/include/Eigen/*: Massive
changes related to upgrade to Eigen-3.1.0
2012-03-13 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenWrap.h: Change the wrap methods to avoid
creating Rcpp::Dimension objects (which are implicitly created by the
Rcpp::Matrix constructor).
* inst/tests/test-solutions.R: Clean up. I defined the results then
reevaluated them.
2012-03-08 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenForward.h: Remove an include of
RcppEigenConfig.h which is no longer needed.
* ChangeLog, NEWS, NEWS.org: Update Changelog and NEWS which is
generated from an org-mode file NEWS.org
* inst/include/RcppEigenConfig.h,
inst/include/unsupported/Eigen/MoreVectorization,
inst/include/unsupported/Eigen/src/MoreVectorization/CMakeLists.txt:
Delete the unsupported/Eigen/src/MoreVectorization module which we
don't need
* inst/include/unsupported/Eigen/src/MoreVectorization/MathFunctions.h:
Delete the unsupported/Eigen/src/MoreVectorization module which we
don't need
* inst/tests/test-solutions.R, inst/tests/test-transform.R,
inst/tests/test-wrap.R: Add testthat test files, temporarily disabled
for R CMD check because of an unknown conflict
* DESCRIPTION, R/unit.test.R, inst/include/Eigen/Cholesky,
..., src/Makevars: Massive changes in upgrade to Eigen-3.1.0-alpha2
2012-03-03 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenWrap.h: Correct a typo.
2012-02-28 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h: Add as
templates for ArrayXd and ArrayXXd
2012-02-03 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenWrap.h, inst/unitTests/runit.sparse.R: Allow
import of compressed row sparse matrices. Add test of same.
2012-01-18 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenWrap.h: Allow for wrapping sparse row-major
matrices.
2011-12-31 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenCholmod.h: Minor typo in a comment
2011-12-23 Dirk Eddelbuettel <edd@debian.org>
* inst/unitTests/runTests.R: unit tests output 'fallback' directory
changed to '..' and files are now in top-level of $pkg.Rcheck/
2011-11-14 Douglas Bates <bates@stat.wisc.edu>
* vignettes/RcppEigen-intro-nojss.Rnw: Many, many changes by Dirk
and by Doug over the last two weeks to create a JSS paper and
updated package. Too many changes to list.
2011-10-26 Douglas Bates <bates@stat.wisc.edu>
* inst/doc/Rcpp.bib, inst/doc/RcppEigen-Intro.Rnw,
inst/doc/RcppEigen-Intro.pdf: Add an introductory vignette.
* src/fastLm.cpp, src/fastLm.h: Use a method for XtX but returning a
MatrixXd, not a view.
* inst/doc/RcppEigen-Intro.Rnw: Describe the SymmEig method correctly.
* src/fastLm.cpp, src/fastLm.h: Use a macro for XtX temporarily. Clean
up code.
* inst/include/RcppEigenCholmod.h, inst/include/RcppEigenStubs.h: Update
to Matrix_1.0.2 versions
* inst/include/Eigen, inst/include/unsupported: update to eigen 3.0.3
* src/RcppEigen.cpp: Add externally callable functions for Eigen version
and SSE instruction sets in use.
* inst/examples/lmBenchmark.R: Suppress messages and provide additional
information about Eigen version and SSE instructions in use.
* R/fastLm.R: Allow optional arguments to be passed to printCoefmat;
adapt to new returned structure.
2011-09-16 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h: Avoid
compiler warnings about comparing signed and unsigned values.
2011-09-13 Douglas Bates <bates@stat.wisc.edu>
* src/Makevars: Force the -DNDEBUG flag to satisfy R CMD check in
R-2.14.0 and higher
2011-09-12 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h:
Remove the solvetype specification for the solve method (but type is
retained for solveInPlace).
2011-09-11 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenForward.h: Remove forward declaration of
non-existent templated function.
2011-09-02 Douglas Bates <bates@stat.wisc.edu>
* DESCRIPTION, inst/include/Eigen/src/Core/util/Meta.h: New release.
ifdef the use of "long long" using RCPP_HAS_LONG_LONG_TYPES (thanks,
Dirk)
2011-08-31 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h:
Delete my addition of a CholmodAutoLLt mode, which is not needed (I
misunderstood something previously).
2011-08-28 Douglas Bates <bates@stat.wisc.edu>
* many files in inst/include/Eigen and inst/include/unsupported:
Upgrade to Eigen release 3.0.2
2011-08-12 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h:
By-passing the const reference
2011-08-11 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h: Add a
solveInPlace method to try to avoid memory problems.
2011-08-10 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h:
Attempted fix of problem of freeing Map'ed memory in the Cholmod
solve.
2011-07-31 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h:
Trying to fix the memory problems from the CholmodDecomposition solve
methods - apparently unsuccessfully.
2011-07-29 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h: Add
LLtAuto method (which doesn't seem to work), more extractors and a
factorize_p method for a const_CHM_SP argument.
* inst/include/RcppEigenCholmod.h: Add a declaration of log determinant
squared function.
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h,
inst/unitTests/runit.sparse.R: Allow rectangular matrix in
CholmodDecomposition's factorize method. Test rectangular version of
KNex example.
2011-07-28 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h: Added
a solveType member - there will be better ways of doing this
* inst/include/RcppEigenForward.h: Include the stubs unconditionally
* inst/include/RcppEigenStubs.cpp:
* inst/include/RcppEigenStubs.h: Inlined the function definitions so it
is a header file now
* inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h:
Extended CholmodDecomposition analyzePattern and factorize to support
rectangular matrices. Added factorize_p method, primarily for the
factorization of A'A + I.
* DESCRIPTION, NAMESPACE, R/SHLIB.R, R/inline.R,
inst/include/RcppEigen.h, inst/include/RcppEigenConfig.h,
inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h,
inst/include/unsupported/Eigen/SparseExtra,
inst/include/unsupported/Eigen/src/SparseExtra/CholmodSupport.h,
inst/skeleton/Makevars, inst/unitTests/runit.sparse.R: Add support for
Cholmod functions linked through the Matrix package. Tests for same.
Wrap of an Eigen::SparseMatrix now returns an S4 dgCMatrix object.
* inst/include/RcppEigenCholmod.h, inst/include/RcppEigenStubs.cpp:
Create stubs and the Cholmod header. (To Do: make the stubs inline
functions in a header file.)
2011-07-27 Douglas Bates <bates@stat.wisc.edu>
* inst/unitTests/runit.sparse.R: Separate the tests for sparse matrices.
2011-07-26 Douglas Bates <bates@stat.wisc.edu>
* inst/include/unsupported/Eigen/src/SparseExtra/SimplicialCholesky.h:
Added matrixLDL method
2011-07-18 Douglas Bates <bates@stat.wisc.edu>
* src/fastLm.cpp: clean up code, taking advantage of the more general
wrap methods
2011-07-15 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h,
inst/unitTests/runit.RcppEigen.R: added as methods for
Eigen::SparseMatrix and Eigen::MappedSparseMatrix classes and tests of
same
2011-07-13 Douglas Bates <bates@stat.wisc.edu>
* DESCRIPTION, inst/include/RcppEigenWrap.h,
inst/unitTests/runit.RcppEigen.R: Dispatch on wrap to vector according
to T::ColsAtCompileTime; modify tests to avoid the .eval() methods;
bump Rcpp version dependence
2011-07-13 Romain Francois <romain@r-enthusiasts.com>
* inst/include/RcppEigenWrap.h: dispatch sparse/dense and generalizes
dealing with sparse objects
* inst/include/RcppEigenWrap.h: comment non generic implementations
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h: comment
non generic implementations
* inst/include/RcppEigenWrap.h: deal with dimensions in
eigen_wrap_is_plain
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h: first
steps into dealing with Eigen expressions
2011-07-10 Douglas Bates <bates@stat.wisc.edu>
* inst/include/PlainObjectBaseAddon.h: Added some begin and end methods
to PlainObjectBase template through the extension mechanism. Should
make these legitimate iterators to simplify some wrap methods (need a
value_type member).
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h,
inst/unitTests/runit.RcppEigen.R: Added as methods for mapped vectors
and mapped matrices (still some code duplication) and tests of same.
2011-07-09 Dirk Eddelbuettel <edd@debian.org>
* inst/unitTests/runit.RcppEigen.R: s/Armadillo/Eigen/ in a few places
2011-07-09 Douglas Bates <bates@stat.wisc.edu>
* inst/unitTests/runit.RcppEigen.R: Added tests of wrap and as. Need to
create an as method for mapped arrays.
2011-07-08 Douglas Bates <bates@stat.wisc.edu>
* DESCRIPTION: Prepare for a new release.
* inst/include/RcppEigen.h, inst/include/RcppEigenForward.h,
inst/include/RcppEigenWrap.h: Add wrap methods for mapped Eigen
objects; Initial support for as<> with some Eigen classes.
* inst/include/unsupported/Eigen/src/SparseExtra/SimplicialCholesky.h:
Commit interim version of the SimplicialLLT and SimplicialLDLT classes
that will appear in Eigen 3.0.2
2011-06-30 Douglas Bates <bates@stat.wisc.edu>
* src/fastLm.cpp: Code simplification suggested by Gael Guennebaud
2011-06-29 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: make Maintainers equal to Authors (but keep our joint
email address)
2011-06-29 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenWrap.h: Syntax errors corrected.
2011-06-28 Douglas Bates <bates@stat.wisc.edu>
* inst/examples/lmBenchmark.R: Print the results from do_bench() so
echo=TRUE is not needed when sourcing; add a suppressSVD argument to
do_bench().
2011-06-27 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h: Add a
wrap method (compiles but currently untested) for
Eigen::SparseMatrix<T>
* src/fastLm.cpp: Include sample code for the Moore-Penrose inverse.
There are better ways of doing this but I can't work out the syntax.
2011-06-25 Douglas Bates <bates@stat.wisc.edu>
* inst/examples, inst/examples/lmBenchmark.R: Add lm benchmark example
* src/fastLm.cpp: tighten code a bit
2011-06-23 Douglas Bates <bates@stat.wisc.edu>
* src/fastLm.cpp: Don't try to extract names that aren't there.
* man/fastLm.Rd: Add a simple example.
* src/fastLm.cpp, src/fastLm.h: Add the SymmEig lm method. Preliminary
support for setting a tolerance for the rank calculation.
* src/RcppEigen.cpp: Use the correct macros for eigen_version.
* man/fastLm.Rd, tests/simple.R: Add examples and test cases for simple
crossprod and tcrossprod functions
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h: bypass
the incomplete exporter functions to support as<>
2011-06-21 Douglas Bates <bates@stat.wisc.edu>
* src/fastLm.cpp, src/fastLm.h: Add an SVD method for fastLm
* DESCRIPTION: Minor fix in punctuation.
* R/fastLm.R, inst/unitTests/runit.fastLm.R, man/fastLm.Rd,
src/fastLm.cpp, src/fastLm.h: Refactoring of the fastLm code to allow
algorithms to be added easily. Adjust docs and R code accordingly.
2011-06-17 Douglas Bates <bates@stat.wisc.edu>
* inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h: Add
wrap instantiations for ArrayXd, ArrayXXd classes in Eigen
2011-06-15 Douglas Bates <bates@stat.wisc.edu>
* DESCRIPTION, R/RcppEigen.package.skeleton.R, R/SHLIB.R, R/fastLm.R,
R/inline.R, R/unit.test.R, inst/doc/RcppEigen-unitTests.Rnw,
inst/include/RcppEigen.h, inst/include/RcppEigenConfig.h,
inst/include/RcppEigenForward.h, inst/include/RcppEigenWrap.h,
inst/unitTests/runit.fastLm.R, man/fastLm.Rd, src/RcppEigen.cpp,
src/fastLm.cpp: Change references to Armadillo into Eigen; author
order in copyright statements.
2011-06-15 Dirk Eddelbuettel <edd@debian.org>
* tests/doRUnit.R: oops: s/Armadillo/Eigen/
2011-06-15 Douglas Bates <bates@stat.wisc.edu>
* src/fastLm.cpp: Initial (not very good) implementation of "fastLmSVD",
which isn't really that fast.
* man/fastLm.Rd: Minor clarification.
2011-06-15 Douglas Bates <bates@stat.wisc.edu>
* cleanup, inst/doc/*: Documentation based on unit tests.
* R/SHLIB.R, R/inline.R, R/unit.test.R: Add support for inline package
* inst/include/RcppEigen.h: Add support for sparse Cholesky and LU
* inst/include/unsupported, inst/include/unsupported/*: Add
support for sparse Cholesky and LU
* man/RcppEigen-package.Rd: Add reference to web page
* NAMESPACE, R/RcppEigen.package.skeleton.R, inst/skeleton/*,
man/RcppEigen.package.skeleton.Rd: Add RcppEigen.package.skeleton and
support files.
* DESCRIPTION: Remove Conrad's text about Armadillo, as suggested by
Dirk
2011-06-15 Dirk Eddelbuettel <edd@debian.org>
* inst/unitTests/runit.fastLm.R: better way to load trees dataset
* man/fastLm.Rd: better way to load trees dataset
* inst/unitTests/runit.fastLm.R, man/fastLm.Rd: added unit tests for
fastLm{Bench,Chol1,Chol2}
* ChangeLog, inst/unitTests, inst/unitTests/runTests.R,
inst/unitTests/runit.fastLm.R, tests, tests/doRUnit.R: added initial
unit tests
2011-06-14 Dirk Eddelbuettel <edd@debian.org>
* inst/unitTests/*: Added initial unit tests
* tests/doRUnit.R: Added hook to run RUnit tests
2011-06-14 Douglas Bates <bates@stat.wisc.edu>
* src/fastLm.cpp: Cosmetic fixes.
* DESCRIPTION: New version.
* man/fastLm.Rd: Change order of fastLmPure arguments in the example.
Dirk said I would miss one of these. :-)
* R/fastLm.R, man/fastLm.Rd, src/fastLm.cpp: Change order of fastLmPure
arguments and the various fastLm* C++ functions. Add fastLmChol1 and
fastLmChol2.
2011-06-13 Douglas Bates <bates@stat.wisc.edu>
* ChangeLog: Add ChangeLog
* src/fastLm.cpp: Handle the rank-deficient case.
* inst/include/Eigen/src/LU/arch/Inverse_SSE.h: Use an _m128d type
instead of long long int for the mask.
* R/fastLm.R: Associate names with coefficients. Clean up fastLm.
Forward the object through summary.
* inst/include/Eigen/src/Core/util/Meta.h: Suppress use of long long
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