* using log directory '/tmp/RtmpoYWa4I/file31fc5a857856/mlr.Rcheck' * using R version 3.5.0 (2017-01-27) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file 'mlr/DESCRIPTION' ... OK * this is package 'mlr' version '2.13' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'elmNN' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'mlr' can be installed ... [22s/22s] OK * checking installed package size ... NOTE installed size is 6.5Mb sub-directories of 1Mb or more: data 3.3Mb R 2.0Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Picked up _JAVA_OPTIONS: -Xmx2048m -Xms512m * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [34s/34s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [18s/28s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [12m/13m] ERROR Running the tests in 'tests/run-classif1.R' failed. Last 999 lines of output: burning and aggregating chains from all threads... done building BART with mem-cache speedup... done building BART in 0.013 sec burning and aggregating chains from all threads... done building BART with mem-cache speedup... Iteration 100/1250 Iteration 200/1250 Iteration 300/1250 Iteration 400/1250 Iteration 500/1250 Iteration 600/1250 Iteration 700/1250 Iteration 800/1250 Iteration 900/1250 Iteration 1000/1250 Iteration 1100/1250 Iteration 1200/1250 done building BART in 0.551 sec burning and aggregating chains from all threads... done building BART with mem-cache speedup... done building BART in 0.028 sec burning and aggregating chains from all threads... done building BART with mem-cache speedup... done building BART in 0.014 sec burning and aggregating chains from all threads... done -- 1. Error: classif_blackboost (@test_classif_blackboost.R#32) --------------- no method for assigning subsets of this S4 class 1: do.call(mboost::blackboost, pars) at testthat/test_classif_blackboost.R:32 2: (function (formula, data = list(), weights = NULL, na.action = na.pass, offset = NULL, family = Gaussian(), control = boost_control(), oobweights = NULL, tree_controls = partykit::ctree_control(teststat = "quad", testtype = "Teststatistic", mincriterion = 0, minsplit = 10, minbucket = 4, maxdepth = 2, saveinfo = FALSE), ...) { cl <- match.call() mf <- match.call(expand.dots = FALSE) m <- match(c("formula", "data", "weights", "na.action"), names(mf), 0L) mf <- mf[c(1L, m)] mf$drop.unused.levels <- TRUE mf[[1L]] <- quote(stats::model.frame) mf <- eval(mf, parent.frame()) response <- model.response(mf) weights <- model.weights(mf) mf <- mf[, -1, drop = FALSE] mf$"(weights)" <- NULL bl <- list(btree(mf, tree_controls = tree_controls)) ret <- mboost_fit(bl, response = response, weights = weights, offset = offset, family = family, control = control, oobweights = oobweights, ...) ret$call <- cl Error: testthat unit tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'mlr.Rmd' using 'UTF-8' ... [0s/0s] OK NONE * checking re-building of vignette outputs ... [3s/4s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 3 NOTEs
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