context("bipartite_projection")
test_that("bipartite_projection works", {
library(igraph)
local_rng_version("3.5.0")
set.seed(42)
g <- make_full_bipartite_graph(10,5)
proj <- bipartite_projection(g)
expect_true(graph.isomorphic(proj[[1]], make_full_graph(10)))
expect_true(graph.isomorphic(proj[[2]], make_full_graph(5)))
M <- matrix(0, nrow=5, ncol=3)
rownames(M) <- c("Alice", "Bob", "Cecil", "Dan", "Ethel")
colnames(M) <- c("Party", "Skiing", "Badminton")
M[] <- sample(0:1, length(M), replace=TRUE)
M
g2 <- graph_from_incidence_matrix(M)
expect_that(as.matrix(g2[1:5,6:8]), equals(M))
expect_that(as.matrix(g2[1:5,1:5]), is_equivalent_to(matrix(0, 5, 5)))
expect_that(as.matrix(g2[6:8,6:8]), is_equivalent_to(matrix(0, 3, 3)))
g2$name <- "Event network"
proj2 <- bipartite_projection(g2)
expect_that(as.matrix(proj2[[1]][]),
is_equivalent_to(cbind(c(0,2,0,2,2), c(2,0,1,2,2),
c(0,1,0,0,0), c(2,2,0,0,2),
c(2,2,0,2,0))))
expect_that(as.matrix(proj2[[2]][]),
is_equivalent_to(cbind(c(0,4,1), c(4,0,1), c(1,1,0))))
bs <- bipartite_projection_size(g2)
expect_that(bs$vcount1, equals(vcount(proj2[[1]])))
expect_that(bs$ecount1, equals(ecount(proj2[[1]])))
expect_that(bs$vcount2, equals(vcount(proj2[[2]])))
expect_that(bs$ecount2, equals(ecount(proj2[[2]])))
})
test_that("bipartite_projection can calculate only one projection", {
library(igraph)
set.seed(42)
g <- sample_bipartite(5, 10, p=.3)
proj <- bipartite_projection(g)
proj1 <- bipartite_projection(g, which="false")
proj2 <- bipartite_projection(g, which="true")
expect_true(graph.isomorphic(proj$proj1, proj1))
expect_true(graph.isomorphic(proj$proj2, proj2))
expect_that(vertex.attributes(proj$proj1), equals(vertex.attributes(proj1)))
expect_that(vertex.attributes(proj$proj2), equals(vertex.attributes(proj2)))
expect_that(edge_attr(proj$proj1), equals(edge_attr(proj1)))
expect_that(edge_attr(proj$proj2), equals(edge_attr(proj2)))
})
test_that("bipartite_projection removes 'type' attribute if requested", {
library(igraph)
g <- make_full_bipartite_graph(10,5)
proj <- bipartite_projection(g)
proj1 <- bipartite_projection(g, which="true")
proj2 <- bipartite_projection(g, which="false")
proj3 <- bipartite_projection(g, remove.type=FALSE)
proj4 <- bipartite_projection(g, which="true", remove.type=FALSE)
proj5 <- bipartite_projection(g, which="false", remove.type=FALSE)
expect_false("type" %in% vertex_attr_names(proj[[1]]))
expect_false("type" %in% vertex_attr_names(proj[[2]]))
expect_false("type" %in% vertex_attr_names(proj1))
expect_false("type" %in% vertex_attr_names(proj2))
expect_true("type" %in% vertex_attr_names(proj3[[1]]))
expect_true("type" %in% vertex_attr_names(proj3[[2]]))
expect_true("type" %in% vertex_attr_names(proj4))
expect_true("type" %in% vertex_attr_names(proj5))
})
test_that("bipartite_projection breaks for non-bipartite graphs (#543)", {
library(igraph)
g <- graph_from_literal(A-0, B-1, A-1, 0-1)
V(g)$type <- V(g)$name %in% LETTERS
expect_that(bipartite_projection_size(g),
throws_error("Non-bipartite edge found in bipartite projection"))
expect_that(bipartite_projection(g),
throws_error("Non-bipartite edge found in bipartite projection"))
})
test_that("bipartite_projection prints a warning if the type attribute is non-logical (#476)", {
library(igraph)
g <- make_full_bipartite_graph(10, 5)
V(g)$type <- as.numeric(V(g)$type)
expect_warning(bipartite_projection(g), "logical")
expect_warning(bipartite_projection_size(g), "logical")
})
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