#!/bin/sh -e
oname=qvalue
pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]`
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
cd $AUTOPKGTEST_TMP
cp /usr/share/doc/$pkg/examples/vignettes/* $AUTOPKGTEST_TMP
find . -name "*.gz" -exec gunzip \{\} \;
export LC_ALL=C
for rnw in `ls *.[rRS]nw` ; do
rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'`
# Somehow Stangle ends up in error but an R file is created anyway so we ignore this for the moment
echo "Stangle(\"$rnw\")" > tmp.R
R --no-save < tmp.R || true
# help requires user input
sed -i 's/^help/#&/' $rfile
R --no-save <<EOT
# Stangle("$rnw")
source("$rfile", echo=TRUE)
EOT
done
rm -rf *
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