ACF ACF ACF.gls ACF.gls ACF.lme ACF.lme Alfalfa Alfalfa allCoef allCoef anova.gls anova.gls anova.lme anova.lme as.data.frame.groupedData groupedData as.matrix.corStruct as.matrix.corStruct as.matrix.pdMat as.matrix.pdMat as.matrix.reStruct as.matrix.reStruct asOneFormula asOneFormula Assay Assay asTable asTable asTable.groupedData asTable augPred augPred augPred.gls augPred augPred.lme augPred augPred.lmList augPred balancedGrouped balancedGrouped bdf bdf BodyWeight BodyWeight Cefamandole Cefamandole coef.corAR1 coef.corStruct coef.corARMA corARMA coef.corARMAd coef.corStruct coef.corCAR1 coef.corStruct coef.corCompSymm coef.corStruct coef.corHF coef.corStruct coef.corLin coef.corStruct coef.corNatural coef.corStruct coef.corSpatial coef.corStruct coef.corSpher coef.corStruct coef.corStruct coef.corStruct coef.corSymm coef.corStruct coef.gnls coef.gnls coef.lme coef.lme coef.lmList coef.lmList coef.modelStruct coef.modelStruct coef.pdBlocked coef.pdMat coef.pdCompSymm coef.pdMat coef.pdDiag coef.pdMat coef.pdIdent coef.pdMat coef.pdMat coef.pdMat coef.pdNatural coef.pdMat coef.pdSymm coef.pdMat coef.reStruct coef.reStruct coef.summary.nlsList coef.corStruct coef.varComb coef.varFunc coef.varConstPower coef.varFunc coef.varConstProp coef.varFunc coef.varExp coef.varFunc coef.varFixed coef.varFunc coef.varFunc coef.varFunc coef.varIdent coef.varFunc coef.varPower coef.varFunc coef<- Coef coef<-.corAR1 coef.corStruct coef<-.corARMA coef.corStruct coef<-.corCAR1 coef.corStruct coef<-.corCompSymm coef.corStruct coef<-.corHF coef.corStruct coef<-.corLin coef.corStruct coef<-.corNatural coef.corStruct coef<-.corSpatial coef.corStruct coef<-.corSpher coef.corStruct coef<-.corStruct coef.corStruct coef<-.corSymm coef.corStruct coef<-.modelStruct coef.modelStruct coef<-.pdBlocked coef.pdMat coef<-.pdMat coef.pdMat coef<-.reStruct coef.reStruct coef<-.varComb coef.varFunc coef<-.varConstPower coef.varFunc coef<-.varConstProp coef.varFunc coef<-.varExp coef.varFunc coef<-.varFixed coef.varFunc coef<-.varIdent coef.varFunc coef<-.varPower coef.varFunc coefficients<- Coef collapse collapse collapse.groupedData collapse.groupedData compareFits compareFits comparePred comparePred comparePred.gls comparePred comparePred.lme comparePred comparePred.lmList comparePred corAR1 corAR1 corARMA corARMA corCAR1 corCAR1 corClasses corClasses corCompSymm corCompSymm corExp corExp corFactor corFactor corFactor.corAR1 corFactor.corStruct corFactor.corARMA corFactor.corStruct corFactor.corCAR1 corFactor.corStruct corFactor.corCompSymm corFactor.corStruct corFactor.corNatural corFactor.corStruct corFactor.corSpatial corFactor.corStruct corFactor.corStruct corFactor.corStruct corFactor.corSymm corFactor.corStruct corGaus corGaus corIdent nlme-deprecated corLin corLin corMatrix corMatrix corMatrix.corAR1 corMatrix.corStruct corMatrix.corARMA corMatrix.corStruct corMatrix.corCAR1 corMatrix.corStruct corMatrix.corCompSymm corMatrix.corStruct corMatrix.corNatural corMatrix.corStruct corMatrix.corSpatial corMatrix.corStruct corMatrix.corStruct corMatrix.corStruct corMatrix.corSymm corMatrix.corStruct corMatrix.pdBlocked corMatrix.pdMat corMatrix.pdCompSymm corMatrix.pdMat corMatrix.pdDiag corMatrix.pdMat corMatrix.pdIdent corMatrix.pdMat corMatrix.pdMat corMatrix.pdMat corMatrix.pdSymm corMatrix.pdMat corMatrix.reStruct corMatrix.reStruct corNatural corNatural corRatio corRatio corSpatial corSpatial corSpher corSpher corStruct corClasses corSymm corSymm covariate<- Covariate covariate<-.varFunc Covariate.varFunc Dialyzer Dialyzer Dim Dim Dim.corSpatial Dim.corSpatial Dim.corStruct Dim.corStruct Dim.default Dim Dim.pdCompSymm Dim.pdMat Dim.pdDiag Dim.pdMat Dim.pdIdent Dim.pdMat Dim.pdMat Dim.pdMat Dim.pdNatural Dim.pdMat Dim.pdSymm Dim.pdMat Earthquake Earthquake ergoStool ergoStool Fatigue Fatigue fdHess fdHess fitted.glsStruct fitted.glsStruct fitted.gnlsStruct fitted.gnlsStruct fitted.lme fitted.lme fitted.lmeStruct fitted.lmeStruct fitted.lmList fitted.lmList fitted.nlmeStruct fitted.nlmeStruct fixed.effects fixed.effects fixed.effects.lmList fixef.lmList fixef fixed.effects fixef.lmList fixef.lmList formula.pdBlocked formula.pdBlocked formula.pdMat formula.pdMat formula.reStruct formula.reStruct gapply gapply Gasoline Gasoline getCovariate getCovariate getCovariate.corSpatial getCovariate.corStruct getCovariate.corStruct getCovariate.corStruct getCovariate.data.frame getCovariate.data.frame getCovariate.varFunc getCovariate.varFunc getCovariateFormula getCovariateFormula getData getData getData.gls getData.gls getData.gnls getData.gls getData.lme getData.lme getData.lmList getData.lmList getData.nlme getData.lme getData.nls getData.lme getGroups getGroups getGroups.corStruct getGroups.corStruct getGroups.data.frame getGroups.data.frame getGroups.gls getGroups.gls getGroups.lme getGroups.lme getGroups.lmList getGroups.lmList getGroups.varFunc getGroups.varFunc getGroupsFormula getGroupsFormula getGroupsFormula.default getGroupsFormula getGroupsFormula.gls getGroupsFormula getGroupsFormula.lme getGroupsFormula getGroupsFormula.lmList getGroupsFormula getGroupsFormula.reStruct getGroupsFormula getResponse getResponse getResponse.data.frame getResponse getResponseFormula getResponseFormula getVarCov getVarCov getVarCov.gls getVarCov getVarCov.lme getVarCov gls gls glsApVar gls-internal glsControl glsControl glsEstimate gls-internal glsObject glsObject glsStruct glsStruct Glucose Glucose Glucose2 Glucose2 gnls gnls gnlsControl gnlsControl gnlsObject gnlsObject gnlsStruct gnlsStruct groupedData groupedData gsummary gsummary Gun Gun IGF IGF Initialize Initialize Initialize.corAR1 Initialize.corStruct Initialize.corARMA Initialize.corStruct Initialize.corCAR1 Initialize.corStruct Initialize.corCompSymm Initialize.corStruct Initialize.corHF Initialize.corStruct Initialize.corLin Initialize.corStruct Initialize.corNatural Initialize.corStruct Initialize.corSpatial Initialize.corStruct Initialize.corSpher Initialize.corStruct Initialize.corStruct Initialize.corStruct Initialize.corSymm Initialize.corStruct Initialize.glsStruct Initialize.glsStruct Initialize.gnlsStruct gnlsStruct Initialize.lmeStruct Initialize.lmeStruct Initialize.reStruct Initialize.reStruct Initialize.varComb Initialize.varFunc Initialize.varConstPower Initialize.varFunc Initialize.varConstProp Initialize.varFunc Initialize.varExp Initialize.varFunc Initialize.varFixed Initialize.varFunc Initialize.varFunc Initialize.varFunc Initialize.varIdent Initialize.varFunc Initialize.varPower Initialize.varFunc intervals intervals intervals.gls intervals.gls intervals.lme intervals.lme intervals.lmList intervals.lmList isBalanced isBalanced isBalanced.groupedData isBalanced isInitialized isInitialized isInitialized.pdBlocked isInitialized isInitialized.pdMat isInitialized LDEsysMat LDEsysMat lme lme lme.formula lme lme.groupedData lme.groupedData lme.lmList lme.lmList lmeControl lmeControl lmeObject lmeObject lmeStruct lmeStruct lmList lmList lmList.formula lmList lmList.groupedData lmList.groupedData logDet logDet logDet.corStruct logDet.corStruct logDet.pdBlocked logDet.pdMat logDet.pdCompSymm logDet.pdMat logDet.pdDiag logDet.pdMat logDet.pdIdent logDet.pdMat logDet.pdMat logDet.pdMat logDet.pdNatural logDet.pdMat logDet.pdSymm logDet.pdMat logDet.reStruct logDet.reStruct logLik.corStruct logLik.corStruct logLik.gls logLik.lme logLik.glsStruct logLik.glsStruct logLik.gnls logLik.gnls logLik.gnlsStruct logLik.gnlsStruct logLik.lme logLik.lme logLik.lmeStruct logLik.lmeStruct logLik.lmeStructInt logLik.lmeStruct logLik.lmList logLik.lmList logLik.reStruct logLik.reStruct logLik.varComb logLik.varFunc logLik.varFunc logLik.varFunc Machines Machines MathAchieve MathAchieve MathAchSchool MathAchSchool matrix<- Matrix matrix<-.pdBlocked Matrix.pdMat matrix<-.pdMat Matrix.pdMat matrix<-.reStruct Matrix.reStruct Meat Meat Milk Milk model.matrix.reStruct model.matrix.reStruct Muscle Muscle Names Names Names.formula Names.formula Names.listForm Names.formula Names.pdBlocked Names.pdBlocked Names.pdMat Names.pdMat Names.reStruct Names.reStruct Names<- Names Names<-.pdBlocked Names.pdBlocked Names<-.pdMat Names.pdMat Names<-.reStruct Names.reStruct needUpdate needUpdate needUpdate.corStruct needUpdate.modelStruct needUpdate.default needUpdate needUpdate.modelStruct needUpdate.modelStruct needUpdate.reStruct needUpdate.modelStruct needUpdate.varComb needUpdate needUpdate.varIdent needUpdate nfGroupedData nlme-deprecated Nitrendipene Nitrendipene nlme nlme nlme-deprecated nlme-deprecated nlme.formula nlme nlme.nlsList nlme.nlsList nlmeControl nlmeControl nlmeObject nlmeObject nlmeStruct nlmeStruct nlsList nlsList nlsList.formula nlsList nlsList.selfStart nlsList.selfStart nmGroupedData nlme-deprecated Oats Oats Orthodont Orthodont Ovary Ovary Oxboys Oxboys Oxide Oxide pairs.compareFits pairs.compareFits pairs.lme pairs.lme pairs.lmList pairs.lmList PBG PBG pdBlocked pdBlocked pdClasses pdClasses pdCompSymm pdCompSymm pdConstruct pdConstruct pdConstruct.pdBlocked pdConstruct.pdBlocked pdConstruct.pdCompSymm pdConstruct pdConstruct.pdDiag pdConstruct pdConstruct.pdIdent pdConstruct pdConstruct.pdLogChol pdConstruct pdConstruct.pdMat pdConstruct pdConstruct.pdNatural pdConstruct pdConstruct.pdSymm pdConstruct pdDiag pdDiag pdFactor pdFactor pdFactor.pdBlocked pdFactor pdFactor.pdCompSymm pdFactor pdFactor.pdDiag pdFactor pdFactor.pdIdent pdFactor pdFactor.pdLogChol pdFactor pdFactor.pdMat pdFactor pdFactor.pdNatural pdFactor pdFactor.pdSymm pdFactor pdFactor.reStruct pdFactor.reStruct pdIdent pdIdent pdLogChol pdLogChol pdMat pdMat pdMatrix pdMatrix pdMatrix.pdBlocked pdMatrix pdMatrix.pdCompSymm pdMatrix pdMatrix.pdDiag pdMatrix pdMatrix.pdIdent pdMatrix pdMatrix.pdMat pdMatrix pdMatrix.pdNatural pdMatrix pdMatrix.pdSymm pdMatrix pdMatrix.reStruct pdMatrix.reStruct pdNatural pdNatural pdSymm pdSymm Phenobarb Phenobarb phenoModel phenoModel Pixel Pixel plot.ACF plot.ACF plot.augPred plot.augPred plot.compareFits plot.compareFits plot.gls plot.gls plot.intervals.lmList plot.intervals.lmList plot.lme plot.lme plot.lmList plot.lmList plot.nffGroupedData plot.nffGroupedData plot.nfnGroupedData plot.nfnGroupedData plot.nls plot.lme plot.nmGroupedData plot.nmGroupedData plot.pdMat pdMat plot.ranef.lme plot.ranef.lme plot.ranef.lmList plot.ranef.lmList plot.simulate.lme simulate.lme plot.Variogram plot.Variogram pooledSD pooledSD predict.gls predict.gls predict.gnls predict.gnls predict.lme predict.lme predict.lmList predict.lmList predict.nlme predict.nlme print.anova.lme anova.lme print.compareFits compareFits print.corNatural corNatural print.intervals.gls intervals.gls print.intervals.lme intervals.lme print.intervals.lmList intervals.lmList print.lmList lmList print.ranef random.effects print.ranef.lme ranef.lme print.reStruct reStruct print.simulate.lme simulate.lme print.summary.lme summary.lme print.summary.pdMat print.summary.pdMat print.varComb print.varFunc print.VarCorr.lme VarCorr print.VarCov getVarCov print.varFunc print.varFunc qqnorm.gls qqnorm.gls qqnorm.lm qqnorm.lme qqnorm.lme qqnorm.lme qqnorm.lmList qqnorm.lme qqnorm.nls qqnorm.lme Quinidine Quinidine quinModel quinModel Rail Rail random.effects random.effects random.effects.lme ranef.lme random.effects.lmList ranef.lmList ranef random.effects ranef.lme ranef.lme ranef.lmList ranef.lmList RatPupWeight RatPupWeight recalc recalc recalc.corAR1 recalc.corStruct recalc.corARMA recalc.corStruct recalc.corCAR1 recalc.corStruct recalc.corCompSymm recalc.corStruct recalc.corHF recalc.corStruct recalc.corNatural recalc.corStruct recalc.corSpatial recalc.corStruct recalc.corStruct recalc.corStruct recalc.corSymm recalc.corStruct recalc.modelStruct recalc.modelStruct recalc.reStruct recalc.reStruct recalc.varFunc recalc.varFunc recalc.varIdent recalc.varFunc Relaxin Relaxin Remifentanil Remifentanil residuals.gls residuals.gls residuals.glsStruct residuals.glsStruct residuals.gnls residuals.gls residuals.gnlsStruct residuals.gnlsStruct residuals.lme residuals.lme residuals.lmeStruct residuals.lmeStruct residuals.lmList residuals.lmList residuals.nlmeStruct residuals.nlmeStruct reStruct reStruct simulate.lme simulate.lme solve.pdBlocked solve.pdMat solve.pdDiag solve.pdMat solve.pdIdent solve.pdMat solve.pdLogChol solve.pdMat solve.pdMat solve.pdMat solve.pdNatural solve.pdMat solve.pdSymm solve.pdMat solve.reStruct solve.reStruct Soybean Soybean splitFormula splitFormula Spruce Spruce summary.corAR1 summary.corStruct summary.corARMA summary.corStruct summary.corCAR1 summary.corStruct summary.corCompSymm summary.corStruct summary.corExp summary.corStruct summary.corGaus summary.corStruct summary.corLin summary.corStruct summary.corNatural summary.corStruct summary.corRatio summary.corStruct summary.corSpher summary.corStruct summary.corStruct summary.corStruct summary.corSymm summary.corStruct summary.gls summary.gls summary.lme summary.lme summary.lmList summary.lmList summary.modelStruct summary.modelStruct summary.nlsList summary.nlsList summary.pdBlocked summary.pdMat summary.pdCompSymm summary.pdMat summary.pdDiag summary.pdMat summary.pdIdent summary.pdMat summary.pdLogChol summary.pdMat summary.pdMat summary.pdMat summary.pdNatural summary.pdMat summary.pdSymm summary.pdMat summary.reStruct summary.modelStruct summary.varComb summary.varFunc summary.varConstPower summary.varFunc summary.varConstProp summary.varFunc summary.varExp summary.varFunc summary.varFixed summary.varFunc summary.varFunc summary.varFunc summary.varIdent summary.varFunc summary.varPower summary.varFunc Tetracycline1 Tetracycline1 Tetracycline2 Tetracycline2 update.corStruct update.modelStruct update.gls gls update.groupedData groupedData update.lme lme update.lmList lmList update.modelStruct update.modelStruct update.nlsList nlsList update.reStruct update.modelStruct update.varComb update.varFunc update.varConstPower update.varFunc update.varConstProp update.varFunc update.varExp update.varFunc update.varExpon update.varFunc update.varFunc update.varFunc update.varPower update.varFunc varClasses varClasses varComb varComb varConstPower varConstPower varConstProp varConstProp VarCorr VarCorr VarCorr.lme VarCorr VarCorr.pdBlocked VarCorr VarCorr.pdMat VarCorr varExp varExp varFixed varFixed varFunc varFunc varIdent varIdent Variogram Variogram Variogram.corExp Variogram.corExp Variogram.corGaus Variogram.corGaus Variogram.corLin Variogram.corLin Variogram.corRatio Variogram.corRatio Variogram.corSpatial Variogram.corSpatial Variogram.corSpher Variogram.corSpher Variogram.default Variogram.default Variogram.gls Variogram.gls Variogram.lme Variogram.lme varPower varPower varWeights varWeights varWeights.glsStruct varWeights.glsStruct varWeights.lmeStruct varWeights.lmeStruct varWeights.varComb varWeights varWeights.varFunc varWeights Wafer Wafer Wheat Wheat Wheat2 Wheat2 [.groupedData groupedData [.pdBlocked Extract.pdMat [.pdMat Extract.pdMat [.reStruct reStruct [<-.pdMat Extract.pdMat
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