Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Jmol
Upstream-Contact: http://www.jmol.org
Source: https://jmol.sourceforge.net/download/
Disclaimer: The recommended way to cite Jmol is:
Jmol: an open-source Java viewer for chemical structures in 3D.
http://www.jmol.org/
Comment: - This package was debianized on Sun, 28 May 2006 23:30:51 +0200
by Steffen Moeller <steffen_moeller@gmx.de>.
- Excluding docbook-xsl and jar files, which are dependencies. We use Debian
system libs instead.
-About JSmol: Peter Ertl <peter.ertl@gmail.com> to
Ximin Luo <infinity0@pwned.gg>:
"The underlying Java source is unfortunately due to various legacy legal
reasons not available."
Can't figure out how to generate in a DFSG way, JSmol disabled for now.
- About jcfl-*-source and HPTouchSmart:
Can't distribute in Debian (no source code, or license is not free)
- JmolColorPocker.js contains very-long-lines.
- translations.tgz is a generated file
Files-Excluded:
*/docbook-xsl-*
jars
plugin-jars
**/*.jar
*/appletweb
*/jsmol.zip
*/doc/jcfl-*-source.tar.gz
*/src/com/sparshui/cpp/HPTouchSmart/*
*/jmol.mac
*/src/org/openscience/jmol/app/webexport/html/JmolColorPicker.js
src/org/jmol/translation/translations.tgz
Files: *
Copyright: 1998-2017 The Jmol Development Team
License: LGPL-2.1+
Files: doc/*
Copyright: 2004 Danilo Segan <danilo@kvota.net>.
License: GPL-2+
Files: src/javajs/img/GifEncoder.java
Copyright: 1996-1998 Jef Poskanzer <jef@mail.acme.com>
2000-2005 The Jmol Development Team
License: BSD-2-clause and LGPL-2.1+
Files: src/javajs/img/Jpg64Encoder.java
src/javajs/img/JpgEncoder.java
src/javajs/util/Base64.java
Copyright: 1998 James R. Weeks and BioElectroMech.
License: BSD-2-clause
Files: src/javajs/img/PpmEncoder.java
Copyright: 1996-1998 Jef Poskanzer <jef@mail.acme.com>
License: BSD-2-clause
Files: src/javajs/util/A4.java
src/javajs/util/M3.java
src/javajs/util/M4.java
src/javajs/util/P3.java
src/javajs/util/P3i.java
src/javajs/util/P4.java
src/javajs/util/T3.java
src/javajs/util/T3d.java
src/javajs/util/T3i.java
src/javajs/util/T4.java
src/javajs/util/V3.java
src/javajs/util/V3d.java
Copyright: 1997-1999 Kenji Hiranabe, Eiwa System Management, Inc.
License: custom
Permission to use, copy, modify, distribute and sell this software
and its documentation for any purpose is hereby granted without fee,
provided that the above copyright notice appear in all copies and
that both that copyright notice and this permission notice appear
in supporting documentation. Kenji Hiranabe and Eiwa System Management,Inc.
makes no representations about the suitability of this software for any
purpose. It is provided "AS IS" with NO WARRANTY.
Files: src/javajs/util/BS.java
Copyright: 1995-2007 Sun Microsystems, Inc.
License: GPL-2 with Classpath exception
Files: src/javajs/util/BinaryDocument.java
src/javajs/util/CompoundDocument.java
src/javajs/util/Eigen.java
src/org/jmol/adapter/*
src/org/jmol/bspt/*
src/org/jmol/export/Export3D.java
src/org/jmol/g3d/*
src/org/jmol/i18n/*
src/org/jmol/modelsetbio/AlphaMonomer.java
src/org/jmol/modelsetbio/CarbohydrateMonomer.java
src/org/jmol/render/AxesRenderer.java
src/org/jmol/render/BbcageRenderer.java
src/org/jmol/render/CageRenderer.java
src/org/jmol/render/FontLineShapeRenderer.java
src/org/jmol/render/UccageRenderer.java
src/org/jmol/renderbio/CartoonRenderer.java
src/org/jmol/renderbio/NucleicRenderer.java
src/org/jmol/renderbio/RibbonsRenderer.java
src/org/jmol/renderbio/StrandsRenderer.java
src/org/jmol/rendercgo/*
src/org/jmol/renderspecial/DrawRenderer.java
src/org/jmol/rendersurface/Plot3DRenderer.java
src/org/jmol/rendersurface/PmeshRenderer.java
src/org/jmol/script/ScriptEval.java
src/org/jmol/script/ScriptMathProcessor.java
src/org/jmol/shape/Axes.java
src/org/jmol/shape/Bbcage.java
src/org/jmol/shape/Uccage.java
src/org/jmol/shape/Mesh.java
src/org/jmol/shapebio/Strands.java
src/org/jmol/shapecgo/*
src/org/jmol/shapespecial/DrawMesh.java
src/org/jmol/shapesurface/*
src/org/jmol/symmetry/*
src/org/jmol/util/C.java
src/org/jmol/util/Elements.java
src/org/jmol/util/Font.java
src/org/jmol/util/Geodesic.java
src/org/jmol/util/Int2IntHash.java
src/org/jmol/util/Normix.java
src/org/jmol/util/Point3fi.java
src/org/jmol/util/Rgb16.java
src/org/jmol/util/SimpleUnitCell.java
src/org/jmol/util/Tensor.java
src/org/jmol/viewer/ChimeMessenger.java
src/org/jmol/viewer/ColorManager.java
src/org/jmol/viewer/JC.java
src/org/jmol/viewer/ModelManager.java
src/org/jmol/viewer/Viewer.java
src/org/jmol/viewer/DataManager.java
src/org/jmol/viewer/FileManager.java
src/org/jmol/viewer/SelectionManager.java
src/org/jmol/viewer/ShapeManager.java
src/org/jmol/quantum/*
Copyright: 2002-2006 Miguel, Jmol Development, www.jmol.org
License: LGPL-2.1+
Files: src/jspecview/*
src/org/jmol/awt/AwtG2D.java
src/org/jmol/awtjs2d/JsG2D.java
Copyright: 2002-2016 The University of the West Indies
License: LGPL-2.1+
Files: src/jspecview/application/ApplicationMenu.java
src/jspecview/application/JSpecView.java
src/jspecview/application/MainFrame.java
Copyright: 2002-2012 The JSpecView Development Team
License: LGPL-2.1+
Files: src/org/jmol/jvxl/*
src/org/openscience/*
Copyright: 2007 Miguel, Bob, Jmol Development
License: LGPL-2.1+
Files: src/jspecview/common/JSVZipUtil.java
src/jspecview/common/PDFWriter.java
src/jspecview/common/JSVersion.java
src/org/jmol/g3d/Pixelator.java
src/org/jmol/g3d/PixelatorScreened.java
src/org/jmol/g3d/PixelatorShaded.java
src/org/jmol/g3d/PixelatorT.java
src/org/jmol/i18n/Language.java
src/org/jmol/jvxl/readers/XmlReader.java
src/org/jmol/quantum/QMAtom.java
src/org/jmol/quantum/QS.java
src/org/jmol/quantum/SlaterData.java
Copyright: 2000-2017 The Jmol Development Team
License: LGPL-2.1+
Files: src/jspecview/java/*
src/jspecview/js2d/*
src/jspecview/popup/*
src/org/jmol/shapecgo/CGO.java
src/org/jmol/shapesurface/Plot3D.java
src/org/jmol/shapesurface/Pmesh.java
src/org/jmol/symmetry/CIPChirality.java
src/org/jmol/symmetry/HallRotationTerm.java
src/org/jmol/symmetry/SymmetryDesc.java
src/org/jmol/symmetry/SymmetryInfo.java
src/org/openscience/jmol/*
src/org/openscience/jvxl/Jvxl.java
src/org/openscience/jvxl/simplewriter/ASimpleJvxlWriter.java
Copyright: 2000-2017 The Jmol Development Team
License: LGPL-2.1+
Files: src/jspecview/java/AwtDialogFileFilter.java
src/jspecview/java/AwtG2D.java
src/jspecview/java/AwtPanel.java
src/jspecview/java/AwtPrintDialog.java
src/jspecview/js2d/JsG2D.java
src/jspecview/js2d/JsPanel.java
Copyright: 2002-2016 The University of the West Indies
License: LGPL-2.1+
Files: src/org/apache/*
Copyright: Apache Software Foundation
License: Apache-2.0
Files: src/org/jmol/adapter/readers/xml/XmlMolproReader.java
Copyright: 2005 Peter Knowles
2003-2005 Miguel, Jmol Development, www.jmol.org
License: LGPL-2.1+
Files: src/org/jmol/adapter/readers/xtal/AimsReader.java
Copyright: 2011 Joerg Meyer, TU Muenchen
2009 Joerg Meyer, FHI Berlin
2003-2005 Miguel, Jmol Development, www.jmol.org
License: LGPL-2.1+
Files: src/org/jmol/adapter/readers/xtal/CrystalReader.java
src/org/jmol/adapter/readers/xtal/VaspChgcarReader.java
src/org/jmol/adapter/readers/xtal/VaspOutcarReader.java
Copyright: 2009 Piero Canepa, University of Kent, UK
2003-2005 Miguel, Jmol Development, www.jmol.org
License: LGPL-2.1+
Files: src/org/jmol/atomdata/*
Copyright: 2007 Miguel, Bob, Jmol Development
License: LGPL-2.1+
Files: src/org/jmol/quantum/NMRNoeMatrix.java
src/org/openscience/jmol/app/janocchio/*
Copyright: 2007 Eli Lilly and Co.
2002-2006 The Jmol Development Team
License: LGPL-2.1+
Files: src/org/openscience/jmol/app/janocchio/NMR_JmolPanel.java
Copyright: 2000-2017 The Jmol Development Team
License: LGPL-2.1+
Files: src/org/molecularplayground/*
Copyright: 2011 University of Massachusetts
Comment:
We have asked the original authors to clarify the license.
https://github.com/molecular-playground/Presenter/issues/1
License: LGPL-2.1+
Files: src/org/openscience/jmol/app/webexport/html/*
Copyright: 2000-2017 The Jmol Development Team
License: CC-BY-SA-3.0
Files: src/org/jmol/minimize/forcefield/data/UFF.txt
Copyright: 2008 The Jmol Development Team
2008 Bob Hanson <hansonr@stolaf.edu>
2007-2008 Geoffrey R. Hutchison
2007-2008 Tim Vandermeersch
Comment: Original source from
https://github.com/openbabel/openbabel, unknown which exact commit
License: GPL-2
Files: src/org/jmol/minimize/forcefield/data/mmff94.par.txt
src/org/jmol/minimize/forcefield/mmff/validate/MMFF94SYMB.PAR
src/org/jmol/minimize/forcefield/mmff/validate/*.mol2
Copyright: 1994-1996 Merck and Co., Inc.
Comment: Original source from
ftp://ftp.wiley.com/public/journals/jcc/suppmat/17/490/MMFF-I_AppendixA.html
ftp://ftp.wiley.com/public/journals/jcc/suppmat/17/490/MMFF-I_AppendixB.ascii
http://server.ccl.net/cca/data/MMFF94/
License: scientific-data-merck
Original authors could not be reached at the advertised email addresses.
Tom Halgren <halgren@merck.com>, <halgren@schrodinger.com>
Simon Kearsley <skk@merck.com>
The data is freely available at the above web/ftp addresses, assume that
distribution is fine. In the worst case, we can replace our copies with
scripts that download them at runtime.
Files: src/org/jmol/translation/*
Copyright: 1998-2012 The Jmol Development Team
2008-2012 Rosetta Contributors (partial)
2008-2012 Canonical Ltd (partial)
License: LGPL-2.1+
Files: debian/*
Copyright: 2016 Ximin Luo <infinity0@debian.org>
2010-2016 The debichem team <debichem-devel@lists.alioth.debian.org>
2006 Steffen Moeller <steffen_moeller@gmx.de>
2004, 2005 Daniel Leidert <daniel.leidert@wgdd.de>
2021 Pierre Gruet <pgt@debian.org>
License: GPL-2+
Files: debian/net.sourceforge.jmol.jmol.metainfo.xml
Copyright: 2022 Pierre Gruet <pgt@debian.org>
License: CC-BY-4.0
License: BSD-2-clause
Redistribution and use in source and binary forms, with or without
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License: GPL-2
On Debian systems the complete text of the GNU General Public License
version 2 can be found in the file `/usr/share/common-licenses/GPL-2'.
License: GPL-2+
On Debian systems the complete text of the GNU General Public License
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License: GPL-2 with Classpath exception
On Debian systems the complete text of the GNU General Public License
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The "Classpath" exception is as follows. For context, first note that:
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License: LGPL-2.1+
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On Debian systems the complete text of the GNU Lesser General Public
License 2.1 can be found in the file `/usr/share/common-licenses/LGPL-2.1'.
License: Apache-2.0
On Debian systems the full text of the Apache-2.0 license can be found in
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