Jmol Documentation
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Jmol Documentation
Table of Contents
1. Introduction
2. Command Line Options
-h,--help
-s,--script
-g,--geometry
-Duser.language
-Ddisplay.speed
-Dplugin.dir
-Xmx
3. Menu description
The File menu
Open
Recent Files...
Script...
Export
Print
Exit
The Edit menu
Select All
Deselect All
Preferences...
The Display menu
The View menu
Front/Top/Bottom/Right/Left
The Help menu
About Jmol
User Guide
What's New
Jmol Console
4. RasMol/Chime Scripts
RasMol/Chime commands
animation or anim
atom expressions
backbone
background
bondorder
cartoon or cartoons
center or centre
centerAt
color or colour
color (atom object)
color (bond object)
color (element)
color (model object)
comment (#)
connect
console
define
delay
depth
dots
echo
exit
font
frame
hbonds
hover
isosurface
label or labels
load
loop
measure or monitor
meshribbon
model
move
moveto
pmesh
polyhedra
quit
refresh
reset
restrict
ribbon or ribbons
rocket or rockets
rotate
script or source
select
set (bond styles)
set (default color scheme)
set (highlights)
set (lighting and perspective)
set (visibility)
set chainCaseSensitive
set debugScript
set measurement
set picking
set spin
show
slab
spacefill
spin
ssbonds
star
stereo
strands
trace
translate
vector or vectors
vibration
wireframe
zap
zoom